AMCG00014494


Basic Information

Item Value
gene id AMCG00014494
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15715800 ~ 15725440 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014494
GGCATACTGAGTAAACAGTGAATATGCTTTCAGAAACAGCGATAAAACGACATAGTTTGCGCCACGGAAGAGGCGTCGTTTTCGATGTGTATGATGTGAAATAAAAGCGTGTGTTGCAGGTCTCGGTGCAGCTCCGATGGCAGACGGCTGATGTCTGACACTATGCGGCACCACTGGCTGCTCCTGGGAGCTTGTGGATGGGTGCTGTTGATACTGATGTTTGCCAGCAAGTTCATCAATTTCAACTTAAGGGTTCCGGATGACTACGGAGGCAAGTCAGAACCGCTTAGCTGGACTGTGACGGCAACCAAGTTAATCAAGTCACTAGCACGAGAGTTGGAGAAGAGTGAGCCACAACCTGCACATCAGCTCCCCGAAGGCACCGTGGCGGTTAACGGAGAAGACTGGCAGGCTGTGGAGAGTGAGCGTCTGGAGCTGGTATCCAGCGTGTGCAGAAACGGCTCGCTGAAGAACCTCACACACACGCCAATTGGCAAGTTTGTCCTCGACAGGATCTTCGTGTGTGACAAGCACAAGATCCTCTTCTGCCAGACTCCAAAGGTCGGCAACACACAGTGGAAGAAGGAGCTTTCTCCACCGTCGAGGAAATACCAGAGAATgtTAAACACGTATTTCAAATTCTTCATTGTGAGAGACCCATTTGAGAGGCTCATTTCTGCCTTCAAGGACAAGTTTCTTCAGAACCCCAGGTTTGAGCCCTGGTATAAACATGACATAGCTCCGGCCATCATCCGCAAATACAGAAAGAACCACATGGAAACCACGGGGCTGCGCTTCGAAGACTTCATCCGTTATCTAGGCGACCCCAACCACAAGAGAGTGGACCGGCAATTCGGAGACCACATAATTCACTGGGTCACCTACGTGGAGCTGTGCGCGCCCTGTGACATAAAGTACAACGTTATTGGGCACCACGAAAGTCTGGAACGTGACGctccttacattttaaaagctgctgGCATAGACCATTTAGTTTCCTATCCTACCATCCCACCAGGGATCACTTCGTACAATAGGACAAAGGTGGAACAGTACTTCTCTGGAATAAGCAAAAGAGACATCCGCCGTCTGTATGCACGCTTTCATGGTGACTTTAGGCTTTTTGGCTACAAGGAACctgattttttattaaactaacCACCTAAattagatttcttttttttttttttttaagaactgtatgtttaaatatagtatatatatatatatatatattaaatccaAACAACAGGGGTCTAATGTTTGCCTGACTAGAACTGCATGCCATTATAAACTGTTAAacgaagaaaaacaaaatttctTTGTGGACCCTCTTACCGAAgtatagaaattaaaattaaaactagaTTATCATTCACACCTAGATCTTCATGCTAGTTAATAAAGGAATTTGGATGTTCTGATGCCCCTGTATTCAAGTTGTTGGGGAAGAAGCATGCAAATggtcagacatttctttcaGTACATAGCCTTTGCCTCAAAACATGGTCAGAACtgttattgatattttaatgcaATTGTGTATTACTGGTGGCCACAATACATTGTCAGTCAGCTAATCATGTGCTGAAGATTTGTATATCACTCATTGTGTGACACTCCAAGagaaacacatgcactcccTTCATAATCTGTTGATGTATACAGGCCTTCatatataaatcattcaaaCTTCTTGTTTGATTGAGTGCTCTTCACACAATAATTGCCTTAGAGCACTTTACAGGATGAATGTGTACATGAAGTAGAGTAGATAAACCGTTAGGcatagaggagagaaaaacaaaaactaaataaatatattgggGTCTAAGGTCCCCCTCCAGTCAAGCAAGAGTTGAAGAATATGGGTGGATCGAATTCTAGACGTATATATTCAGAGGAAATGGAGGAGTGTAATGGATtcacaacttattttttttctccagcatGAGACTGAGGCTGGGAGATTGTACCCCGGACAGACCAGCACTAACAAAACTCTTTTGTATCTCGAAACAGATGTTCTTctgttatgaaaatgtaaaagattgTAATAAACTGTCTGGCTTAAAATCATGGAATTTTCCTCACAAGGAtccatatacagtactgtgcaaatgttttaggcag

Function

GO:

id name namespace
GO:0016740 transferase activity molecular_function

KEGG:

id description
K09674 CHST10; carbohydrate 3-sulfotransferase 10

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014494 True 2133 mRNA 0.43 6 15715800 15725440

Neighbor

gene id symbol gene type direction distance location
AMCG00014496 pdcl3,LOC106586481,LOC102788355 coding upstream 12341 15700154 ~ 15703459 (+)
AMCG00014487 zc3h13,LOC105022574,LOC106573267,LOC106510916 coding upstream 44652 15656929 ~ 15671148 (+)
AMCG00014489 lcp1,LOC106582249 coding upstream 60955 15630190 ~ 15654845 (+)
AMCG00014488 NA coding upstream 98635 15600159 ~ 15617165 (+)
AMCG00014482 NA coding upstream 193319 15517871 ~ 15522481 (+)
AMCG00014495 NA coding downstream 10205 15735645 ~ 15749118 (+)
AMCG00014501 NA coding downstream 55149 15780589 ~ 15781550 (+)
AMCG00014500 LOC101071565 coding downstream 97836 15823276 ~ 15870879 (+)
AMCG00014503 NA coding downstream 149143 15874583 ~ 15877671 (+)
AMCG00014505 NA coding downstream 159823 15885263 ~ 15903047 (+)
G70418 NA non-coding upstream 190785 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 209752 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 214968 15500558 ~ 15500832 (+)
G70409 NA non-coding upstream 264532 15450778 ~ 15451268 (+)
G70378 itm2b,LOC108430053 non-coding upstream 284948 15350642 ~ 15430852 (+)
G70496 NA non-coding downstream 1994 15727434 ~ 15728917 (+)
G70562 NA non-coding downstream 192973 15918413 ~ 15918621 (+)
G70637 NA non-coding downstream 511670 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 764971 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 1005438 16730878 ~ 16733637 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 29901 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 473467 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1358932 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1510786 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 2026612 13655238 ~ 13689188 (+)
AMCG00014508 NA other downstream 404039 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 740181 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1639358 17364798 ~ 17487050 (+)
G71004 NA other downstream 2546414 18271854 ~ 18274360 (+)
G71525 NA other downstream 7129902 22855342 ~ 22855646 (+)

Expression


Co-expression Network