AMCG00014499 (cnot11,LOC106582250)


Basic Information

Item Value
gene id AMCG00014499
gene name cnot11,LOC106582250
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15673026 ~ 15676127 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014499
ATGACGCTGGCCCCGAAGGAGCTCTCCAATCTGTTGGGGATCATCTCTGAGGAAGCCTGCACCAACACCTTTGAAGGTCTTTCCACTGCCTTCCATCACTACTTTGGGAAAGCCGAGCATTTCCGAGTGGGCTCGGTGTTGGTGATGCTGCTGCAGCAGCCAGACCTCCTGCCCAGCTCGCCGCAGCGCCTGACCGCCCTGTACCTGCTGTGGGAGATGTATCGCACCGAGCCGCTGGCTGCAAACCCCTTCGCCGCCGTCTTCGCTCACCTCTTGAACCCCGCACCCGTTGGGGAGGAGCAGGAGAAGCAGCTCTCCGGTTTTCTCCCTCCTATAACATTGCCAGAGAAATTCTTCCTCTCCCAGCTCATGCTGGCACCCCCCAGAGAACTGTTCAAGAAGACCCCTAGGCAGGTGTCCTGCATGGATGTGGGAAACATGCCCCAGTCAGTAGATATCAGTGGGCTTCAACTGGCCTTGGCAGAGCGCCAGTCAGAGTTACCTACCCAAAGTAAGGCCAGCTTTCCCAGCATCCTTAATGATCCTGATCCAGATTCTTCAAACTCTGGGTTCGACAGCTCGGTGGCCAATCAGATCACAGAGGCCTTGGTCAGTGGGCCACGTCCACCACTGGAAAGCCACTTTCGACCCGAGTTCATCCGGCCCCCACCGCCTCTTCATGTGTGTGAAGACGAGCTGTCCTGGCTGAACCCCTCTGAGCCCGACCACAGCGTGCAGTGGGACCGCTCCATGTGTGTGAAAAACAGCACTGGTGTGGAGATCAAACGGATAATGTCCAAGGCCTTCAAGAGCCCCCTGTCTGCACAGCAGCAGTCACAGCTGCTTGGAGAGCTTGAGAAAGACCCAAAGCTGGTGTATCACATCGGGCTGTCCCCTGCAAAGCTGCCTGACCTGGTGGAGAACAATCCACTGGTCGCCATTGAGATGTTGCTGAAGCTGATGCAGTCTAGTCAGATCACAGAGTATTTCTCTGTGCTGGTCAACATGGACATGTCTCTGCATTCCATGGAAGTGGTCAACAGacttACAACAGCAGTTGATCTTCCACCAGAGttcattcatttatacatttcaaattgtatttcaacCTGTGAGCAGATCAAGGATAAATACATGCAGACATTGAATAACATgagaaatgaaatattttgctttcaGAACCGCTTGGTCCGCCTCgtctgtgtgtttcttcagTCTTTGATCCGAAACAAAATCATCAACGTCCAGGACTTGTTTATAGAGGTACAGGCCTTCTGTATCGAGTTCAGCCGGATCAGGGAAGCTGCTGGCCTTTTCCGCCTGCTTAAAACTCTGGACACTGGAGAGAACCCAACAGAGGCCAAACCCAGCAAATAA

Function

symbol description
cnot11 Predicted to be involved in mRNA catabolic process and negative regulation of translation. Predicted to act upstream of or within gene silencing by RNA and regulation of translation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of CCR4-NOT complex. Orthologous to human CNOT11 (CCR4-NOT transcription complex subunit 11).

NR:

description
PREDICTED: CCR4-NOT transcription complex subunit 11 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014499 True 1377 mRNA 0.53 7 15673026 15676127

Neighbor

gene id symbol gene type direction distance location
AMCG00014491 NA coding downstream 45918 15619162 ~ 15627108 (-)
AMCG00014493 NA coding downstream 77453 15590989 ~ 15595573 (-)
AMCG00014492 NA coding downstream 109025 15526728 ~ 15564001 (-)
AMCG00014485 nudt15 coding downstream 301901 15370180 ~ 15371125 (-)
AMCG00014484 NA coding downstream 310096 15350804 ~ 15362930 (-)
AMCG00014498 NA coding upstream 3668 15679795 ~ 15697711 (-)
AMCG00014497 NA coding upstream 73207 15749334 ~ 15751165 (-)
AMCG00014511 rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936 coding upstream 297226 15973353 ~ 15993156 (-)
AMCG00014510 NA coding upstream 365106 16041233 ~ 16067562 (-)
AMCG00014509 NA coding upstream 479131 16155258 ~ 16164120 (-)
G70458 NA non-coding downstream 28112 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 148012 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 166515 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 286326 15383633 ~ 15386700 (-)
G70402 sucla2,LOC107705569,LOC107584790 non-coding downstream 296252 15374238 ~ 15376774 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding upstream 24081 15700208 ~ 15703314 (-)
G70660 NA non-coding upstream 536417 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 605558 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 689997 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 789652 16465779 ~ 16469228 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2539275 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4005489 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4535940 11125029 ~ 11137086 (-)
G69537 NA other downstream 4874879 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5611796 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 1045946 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1770741 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1913140 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 2314524 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3525676 19201803 ~ 19203567 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037506 cnot11 coding NC_007120.7 CM002893.2 56232548 ~ 56245149 (+)