AMCG00014506 (fdx1)


Basic Information

Item Value
gene id AMCG00014506
gene name fdx1
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16008399 ~ 16036760 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014506
ATGGCCGTCCGACTGTCTATACGAGGCGTGGTTGTTTCAGTGCACAAGCCGCTGAGCACCGTGGTTTTGTCCGGACGCCGGGGAAAGGCCTGTAGTCGTAACCGAGCTTTTAGTTCCTATGCCGGCGCACTCAGGTCAGAAGACAAAGTGACCGTCCATTTTATCAACCGCGATGGAGAGAAGATCACTGTGAAGGCCAACCTCGGGGAGTCTTTATTAGATGTTGTGATTGATCAGAATCTCGATTTTGATGGTTTTGGTGCCTGCGAGGGGACGCTGGCGTGCTCCACCTGCCATTTAATCTTTGAAGACGACACCTTTAAGAAGCTGGAGCCAATCACAGATGAAGAGATGGATATGCTGGACCTGGCGTATGGACTCACTGACACATCGCGCCTGGGCTGCCAGATCTGTCTACGCAAGTCGCTGGACGGCATGGTTGTTCGAGTGCCAGAATCTGTGGCCGATGTTAGGCAATCTGCAGATATGGGCACAACTTCCTCTTAAGCCGATGTCACACTGAGACTTTTAGTGAATTCATTTTCtcctgtaattaataaatatattttaacagtataattatgcatttgttcaGAACATATTGCCCTCTGCCAACACACCTGAATAGAGGCCTCTGTCACAGTGGTTTAGTGTGATATGTCACAGTGATTCATTCCTGTGTCTTGAGCCGGCCAAATGTGCAGTGCAGGCTGTGTGGTCTGCTTTCAGCAGCAAGATCCTCCTGACAACTGCATACCAAGACATGCCTTACCCAATTAAAGGCTTATAAATGAGAAGCTGGTCCTCATATTATATTGGATTAAAGAATTAAGCATTATGAAAGCATAGGAATGCCACCCAAGTGTGGAACTGAGAATCATTTTGTAAGGTGAGGAGCTGGTCTTTTTGGTTCTTCATGTGCTGCTTTATGGATGTTTTCAAGACCCAATGAGCTTCTGAACTTATACAGTTGGGCATAAGCACTACAGAAACCACAGATCAggttatacagttaggtccataaatatctgtacagtgacacaattgttacatccaaattgggtgaacggtgtaggaattaaacccatttttagatatggtccccccaattttaggggctcaaaagtaattggacaaactaacctaatcatgaatttaattgtgagtttaaatacttggttgcaaatcatttgcagtcaatgactgcctgaaatagacatcaccagatgctgggtttcttccctggtgatgctctgccaggcctgcactgcagctgtctttagttcctgcttgttctttgggtgttttcaaaacaaaccaatcggagagatagcaaaaacattacgtgtggccaaatcaactatttggtacattcttaaaaaacaacacacttgtGAGCTggtgattgtttcctttcaaatccattgtgctgGCGTACAGGGCCAAAATGATGATGGTTGTGTccctgtccaaatatgtattgacctaactgtatatctgAAATATGTGAGACTGAATTGAATCAAATCGTGGCATCAGGTTGTGCTTAGTGGACCATGTTTTACAGtgaatcagttttatttatatcaaaTTTGACCATGAAAGGGGAGAGAAAGTTCTAGGTAATGATCACAATAAGGTCCTTTCTAAGGTGTAGAGGTAATTATCACCCACATCAGTTAAGGGATGTTctatctgtttaaataaaaacatcttaagCAAATGACAGGCATATTCTTTTAACCACATGATAGTACTGTAAATTGTTATTGAATGGAGTATTTCCTAGAGTTCATTGATATTTTTAGATGATACAAAATCACCATGTGTTGTGTGCCTATAttcactgaaataaaaccagATTATATGTATAATCACTTGGTGCTTTACTCACATTTGTTTAACTCATTTCTGCCTAGGCAATATGTATCCATGtcctgtcatttaaaaaaattagtATTCACTTCCACAATACCTGCATTATAATTAGGGTCCTGCATTTTGCATGGCTTTGCTTTTTTAACTATGTTAGTCATGTAAAACACGTCCCTAATTGTAATCAATGTGAACAATGCCTAATTATCACCTACTGTAATTGGAATACCACAGGGCATTATAGACTTATAGgctgaacatttaaatataaattaagtagCATTCTTCTTCTTTGCACTTCCCCAtctatattgtttaaatgagTCTATGTTACTGTCATGTTCCTCAGCACTATGCAGTTTTATACTTTGAGTATATTCACATCAAACATTGAGACCAAATTCCCACACAAACAGTGTTGCTTTTCAGTTGGCCTTCATGCAGGTCATTTGAGGTGTGAGGggtacaaataattataaaccgACCAGACAATTGTTAATATGAAGTTTGTCTACATGCGTCTCTTGACCAGTTCTTGCCACATTAAAAAGCATATGATAACAATTTTCTAATCATAAGAAATCACTATGATTTCAACAGTGTatgcttttacatttcatacaCATTAAAGTTACACACTGCTGGAAGGGTGCACAGAAATACTGCACAGGGACTGCTCTTGACACAAAGATGAGAGATCTACAACAAGgagtttattatatatatatatatatatatgaaatccAGTGATCTTAAGacttttatatatgaaaaaataaatgaattccaAAAGAGGTTTGGGTGTTATTTGGGTTAAGGTGTGATGTAATGGGTTTGTATTGCAACACGTGTTTCTATACAGATTTTCTTGCCATTGCATCACAACAAGGCCTGACTTAATTTCTACCCTTTAATAAcctattttatacattttcccagttttagtttttccatttgtatcgGTTATGatgtagttttaaataaatgtgttatatatagTTGTGCTGTAGTAGAAATACTTATGAAATGATTATTTTGAGCCCTGGGCAGCATGAATGCAAGTGTCCTTGGCTGTGTCTCTGAGAGTGAAGGCATTTCACAACTATTTCAGGAGAAGCTGAAATTTTCTTGTTTGGATTCTTAATGAGGCCACCAGGCACCAATTTAGAGTCACACCCACTAGAATAGGAAAAAGGAGTATTCCCTATGATGGGCTGCCTGTTTTTTAAGATTCAATTTCGGCATTAGGTTGTTTAAACCAATGAGGGTTTTATAATGGGTAGTAAGATAGTTATCTATAGTGTCTAATTATGACTTTAAATCAGATCTTTAAATCTGAGCTATGTCCTGTCTCATCACTTTATTAATTTTAGATTATGAGTTTGCACTTGTTCTTATTAaaccatgaaattaaaaaataaattgagaaaaaat

Function

symbol description
fdx1 Predicted to enable 2 iron, 2 sulfur cluster binding activity; electron transfer activity; and metal ion binding activity. Acts upstream of or within negative regulation of epiboly involved in gastrulation with mouth forming second. Is expressed in brain; digestive system; heart; and pleuroperitoneal region. Orthologous to human FDX1 (ferredoxin 1).

NR:

description
adrenodoxin, mitochondrial

GO: NA

KEGG:

id description
K22070 FDX1, ADX; ferredoxin-1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014506 True 3309 mRNA 0.38 5 16008399 16036760

Neighbor

gene id symbol gene type direction distance location
AMCG00014502 NA coding upstream 53698 15947580 ~ 15954701 (+)
AMCG00014504 NA coding upstream 91433 15907581 ~ 15916966 (+)
AMCG00014505 NA coding upstream 105352 15885263 ~ 15903047 (+)
AMCG00014503 NA coding upstream 130728 15874583 ~ 15877671 (+)
AMCG00014500 LOC101071565 coding upstream 137520 15823276 ~ 15870879 (+)
AMCG00014507 NA coding downstream 102713 16139473 ~ 16154656 (+)
AMCG00014514 NA coding downstream 128085 16164845 ~ 16189661 (+)
AMCG00014512 mphosph8,LOC106586589 coding downstream 155163 16191923 ~ 16208140 (+)
AMCG00014513 NA coding downstream 221481 16258241 ~ 16278438 (+)
AMCG00014516 ift88 coding downstream 309274 16346034 ~ 16370627 (+)
G70562 NA non-coding upstream 89778 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 279482 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 483384 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 502351 15505814 ~ 15506048 (+)
G70413 NA non-coding upstream 507567 15500558 ~ 15500832 (+)
G70637 NA non-coding downstream 200350 16237110 ~ 16240338 (+)
G70735 NA non-coding downstream 453651 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 694118 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 992200 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 1095303 17132063 ~ 17173062 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 322500 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 766066 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 1651531 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 1803385 14189564 ~ 14205014 (+)
AMCG00014423 pou2f1b,LOC107748141 other upstream 2319211 13655238 ~ 13689188 (+)
AMCG00014508 NA other downstream 92719 16129479 ~ 16139032 (+)
AMCG00014525 NA other downstream 428861 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 1328038 17364798 ~ 17487050 (+)
G71004 NA other downstream 2235094 18271854 ~ 18274360 (+)
G71525 NA other downstream 6818582 22855342 ~ 22855646 (+)

Expression


Co-expression Network