AMCG00014509


Basic Information

Item Value
gene id AMCG00014509
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16155258 ~ 16164120 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014509
ATTCGGAAAGATGTATTGTCTGTTTCTAAGGGAGCGCGGAGtttgtcaatgtgtgtgtactTGAGCTTTTGGAAAATATTAGGTCTTGATAGGAAGCACAGTAATTGAAGGAAATTATTAGCATGTCTATACACCCTGCCATCAAGATACCCTGAAGAAAGTAAATGATGTCATCTTCAGCTGGGTTGCAGTCAGAATCAAACATTCTAGCTCAGTGGATGCCATGCAGTTCCCGGGCTGGGGTAATACTGAATCATCAACTGGACTTCGTTAGCCCCTTGAAAGCCACCTGGATGCCAGAGGATGTCAATGATTCTTTCTCCACCCAGTTCGTCCCACTCCCTGCGTCAAATAACAGTAGCTGCCTCAGTGTGGACTCCCTTCTGCTGGCAGATGCTGCAGCTAAAGGCACCTCAAACCAGGAGGGTGACGCTTCGTTTGACATCAGAGCCCTCCAGCCCACTGGACTGAACACTATCTCATCACCTGCAACTTCTGAAGGTCTGTCCCGGGAGCTAGACAGCATGGATGAGGCTGGCAACACTAGACAGAGGCATGACTTTCCCTTAATGCAGAAACTTGAACAGttgAAGGAGTGGCAGCAGCAGAAGCAGGAACAACTCAAGCTCCACCAGATGCAGCAGCTCCACCGGCTACTGGAGGAGCAGCAGAGACTGCTCCACATGGTGTCTGCACAGCAGGCCCTCACAGGTGACCCCAAGATGCCCGAGCCTGCTGAAAATGAAGAGATGTCTGCCTACGATGCTTCAAAGGGACTTTTCTCACTACCAAATGTACACACTTATTCCAGTGTGACTGACTGTAGAGTCCCTGTGGAGCAGTATTCCTTAGCGCTGCAGGCAGAATCCCCTGAGCAGAAAGCAGACCGGACGTTGAGAAACAGTGTACTAGGGAGCCCCTGTGATCCAGATACCGAAGAAGAGGAAGATTCAAATGCAACTATGGGACAAAGCCTCTCTTCTGAAGGTCCAAGTAGTGAAGAGCTGCACAGAAGCAGTATTTATGAAGACACACCTCAGCCCAGGAAGCCCCGTGTGACACAAGAGTCCCTCCTCCGGGGCCCAGACGGAGATGATGCCTCACAGGAAGAACTCTTACAGACAGGGGACAGGCCAATCAGGCCTGGGATTGGAGGCAGGAAGCAGACGTTTGAGGAGCTCCTGGAGGAACAGCTGAGACTGGAGGAGCAGAGGCTACGAGCGACTGAACTGGAGCAGCAGggCCCAGCTCCGACCGAGGAAATAAAAGACAACCCTAAAAGAACCTTCCTGAAGCGTGGCGAAGGTCTTTCCCGGTTTACTAAAGGGAAAGCTGTTCCAGTCAAGAAACCCATTAAAACCAATGCTAAGGCACAGCCCAAGCATGTTGTGAAGAATGCCCAACAGCAAGAGCCCAAGAACACAGTAAAGAACACCCTACAGCCAGTCCAGCGCAAGACTGCCATTTTGAACAAAGAGAACAACTGTGAGCATTTAAAGAGCCCTTTCAACCGGCCAGAGCCCGTGTCCTTGACCAGGGGGGGGCAGGTGCTGAAGGTTCTTGGCAACCATATTGGGCAGACTCAAGACCCTGCAAGAGACTTCAGACCTCAAAATCAGAGCAAACCACTGGGGCAGGTTGCGAAATCCCAGGAAGCAGTGGGCATGAAGATTCAAGGGATAAGAGTAGAAGCTTCCCAAACAGTGTGTGCTGTGCCTGCAAAGACTGTTGTAAAGCAGGCATGTTTGGAGGAGAAAGGTCAATGTATACTGCCGCAGTTATCTACAGACATACCTCCTAAAGACCGGGAGTATTCCTTTGAGCTGTCTTTCCAGAGGAAATCCGAGAAGTGGGAGACGCAGAAACAGAAGGAGAACATAGAACTCGATGAGTTTGAGCTTCTGGAACAGGCAGCTGATGAAATTTCCTTTTCTAGCAACTCCTCCTTTGTCCTAAAAGTGCTGCAGATGGACCAACAGGAGCACAGAGGGCACAGGCTGTCCTCTACACCTGTTAAATCTCCACAACCTTTGAAGGAAAATCCAGAAACCAGCAACAAAGCTGGCCAGAGTCCCCTTGGCTCCCAGACTACACGAGAAACTGGGGGCTTCAAGCAAGAGGAGGCTGAGCAGGCAGCAAAATCAGAGTGGGATTTAAAGGACCAGAATAACGATCCAGAGGATAGAGGAGATGAATCCAGTGCAATGGATGCAGTATGTGACCATTCGTGGCAAAGCGATTTAGACTCTGAGGACCTGGATGATACTCTGCAGGATGAAAAGACCCTGCAGGAGGGGAAAGCAGGGCCCAGTGGTCTTTATGACTCCAATGCACTCCAATATGACAGATCATCCTATCAAGATGGTGCTATAAAGCACAGTTTTGCAGCCAGGGAGTGTGGTTATGGGAGCACTGATGGTCTAACCACTACTGGAGACAAGGggacaaataacacaaatggcTTTGTGTTTGACGATGACGACACGTGGAATGACTTCAATGACACTGGTAACGTGGAGGTGGAAGATATTCCAAGATGTCCGGAAGTAGCCCATAGTGAGTCTGTCTCCCCAACCGAAAAAAGCACCTCGCTGACAGACAGAGCGCTTAAGAGGAAGGTGGCTGCGGTGAAGACAGCCGAGGCTAAATCAGGAGATGGTTCAGAGCCTCCCCCAACTTCAGATCTGATAGCCAAGCTATTCCCATCCCTGAAGCCCAAACCCAAACCTGCTCCGTCTCAGGACACTGCGTCGAGTAATAAAGCAGCTGAGCAAGCATCAGGGAACAACCCCCAGTCTACGTTGCTGAGGCACAGGCTGGTGGAGTTGGAGACGGAGATCGAGCGCTTCAGGGCAGAAAACTCTGCGCTGGCAGTTCTGCggcaggagagggagaaggcACTGGAGACCCTGAGGAAGGAGATAGCAGAGACTGAACGGAAGAAGTCTGAGGAGctcgctctcctggagaagctgAAGAAAGAGGAGATGAAAAAGCTGCAGAAGGAGCGCaaagtatttgaaaaatatgctGCCGCCGCCAGGGCCATACCGGACAAGAAGGAGCGAGAGGAGATGCAGGTGCTGAGGCAGCAGGTGACGTCCCTGCAGGAGGAGCTGCAACGCAGGGAGACGCGCTGGGCCAGCACCCACAGCCGTCTGCGTCAGCAGCTGGACACCGTGAGCAAAGAGAACAGTGCCCTGCGCGATGAGGTGCGGGCGCTGGAGCGACTGCGTGTGCAGGCATGGAGACAGGCAGAAGCGGAGTCTGGGAAGCCCAACCAGGCAGACGCCAGCACACATGGCCTTCAAAGAGCCAAGTCCACTAGTCCTCTGTGTGCTGTGAAGAGTAGCCCTCCAGTGACAAAGCAAACACAGAAGAACAGCCCCCCAGTGAGAGTCAACAGTAAGGGATCTACCCTAGTCCCATCCAACACATCTGTTCCAGAAGAGCAGGTGCTATCAGAGCCCAGGCGGATGATGCTCTGCCCACAATCTCCTTCTGCAGTCCCTCCTAGCACGCTGCAGACTGGGCTGTTACAGACAATGTGTGACGTTAAGGAAAGTGTCGATATCCAGGAGGAAATCACTCATCCAGATGGAAAGATAGAACGGCTGTTACGAAGTGGATCCAGATTAATTGTTTTCCCCAATGGGACCCGTAAAGAGGTGTTGGCGGATGGGAAGACTGTGAAGGTTACGTTCTTTAATGGGGATGTTAAACAAATCATGGCAGATCAAAGAGTGATTTACTATTATGCTGATGCTCAGACAACTCATACCACCTATCCAGATGGCCTGGAGGTATTGCAATTTCCAAATAGccaaatcgAAAAGCACTTCCCCGATGGCCGAAAAGAAATCATATTTCCAGATCAGACCATTAAGAATCTGTACCCCGACGGCCAGGAGGAAAGCATTTTCCCAGATGGATCTATAATACGAGTGAAGCTAGATGGAAGTAAAGTCATTGAATTCAACAATGGGCAGAGAGAAGTGCACACAGCAGAGTACAAGAGGCGAGAGTACCCTGATGGGACGGTGAAGACTGTGTTCGCCGATGGGCAGCAAGAAACCAGATACACCACCGGCAGAGTACGGGTCAAGGATAAGGATGGGAATGTGGTAATGGACACTAGGAGCTAGACTGGACACCAAGACTTCACAAACCATTGGACTTCTTGCATGTCCAGATTccaagagtgtgtgtgttttaaccagGGAAAATGTCACATGGAACTTTGTGTTGTATGCAGTGAAACTGAGTGGagtgttaaattaaatgtaaataatgtatattaaaa

Function

GO: NA

KEGG:

id description
K11502 CENPJ; centromere protein J

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014509 True 4303 mRNA 0.50 17 16155258 16164120

Neighbor

gene id symbol gene type direction distance location
AMCG00014510 NA coding downstream 87696 16041233 ~ 16067562 (-)
AMCG00014511 rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936 coding downstream 162102 15973353 ~ 15993156 (-)
AMCG00014497 NA coding downstream 404093 15749334 ~ 15751165 (-)
AMCG00014498 NA coding downstream 457547 15679795 ~ 15697711 (-)
AMCG00014499 cnot11,LOC106582250 coding downstream 479131 15673026 ~ 15676127 (-)
AMCG00014515 pspc1,LOC108258933 coding upstream 67445 16231565 ~ 16250776 (-)
AMCG00014521 LOC106575534,LOC106575594 coding upstream 136513 16300633 ~ 16307473 (-)
AMCG00014520 NA coding upstream 144168 16308288 ~ 16308806 (-)
AMCG00014519 NA coding upstream 152414 16316534 ~ 16346355 (-)
AMCG00014518 NA coding upstream 211300 16375420 ~ 16376973 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 451944 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 510344 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 630244 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 648747 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 768558 15383633 ~ 15386700 (-)
G70660 NA non-coding upstream 48424 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 117565 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 202004 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 301659 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 1120199 17284319 ~ 17284576 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3021507 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4487721 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5018172 11125029 ~ 11137086 (-)
G69537 NA other downstream 5357111 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6094028 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 557953 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1282748 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1425147 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1826531 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3037683 19201803 ~ 19203567 (-)

Expression


Co-expression Network