AMCG00014510


Basic Information

Item Value
gene id AMCG00014510
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16041233 ~ 16067562 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014510
ATCTGGGACATTCCTTCATCTGGCCAGCACACTGTATTACAATCAGCTCTTCACAGCTGCCCCTCCTCAACGCGTAAGAGCGGCGAACCCGGCGGCGCTGGGACCGCACGGTCAGAGGACTCACTCCGGTTAGGGCGCAGACAGGTTGTCTTCTCCTGATCTGCGCACAGAGCATGAAGCCTGACGCCCAGCAGTGTGTGCCAGTATACTTACACACACGTATCTAGTGAAGATGTTCTGAAATTGTGCaagaccttttttttccccctgttgcCTGGTTGGAGAAGTTGGGATGGATATGGGACTAAGCGCAAACTGACATTTGTGAAGGTCTCTTCTCAGCCTTCATGGAAACTATGTCACCTCAGCAGGATCATATTGGCCAGAGTCGCTCTGCATCTTTAACAGGAGAGTCTAAGATCTGTGGGGCACCAGAAGGCAAGAAGAAAATGAAGACCCTAGCACAGAGGAGGCAGTCGGCACCATCGCTGGTCATCAGCAAAGCACTCGGCAAGTCCAGAACCATCTCCAGAGAGAGCTGCCTGTCCCCCATCAGCCCCGAGTCCTGCCCCCTGGTCCAGTCGTTCCTGTGCCCTGCACGAGTGTTCGTTGCAGACAGCCATGTCCAGCTCAAGGCAGGACTGCAGACACAGGAGAGACATCTCTTCCTGTTCAGTGACATCCTGGTCATCGCCAAATCCAAATCCACGTCGCACTTTAAGCTGAAGAATCGCATCCGTATCTGCGAGATGTGGACAGCCTCATGCATGGAGGAGGTGTGTGAGGGCAGCACTAGCCCTGACTGCTCCTTTGTCATGGGCTGGCCCACTACCAACTGTGTGGCTACTTTCAGTTCAacagaggagaaagaaagatgGCTTTTCTTAATAAAAAGCCGAatcaaagaggaaaaagaaaaagacgaTACTATAACAatccctttaaaaatatttgcaaaagaTATTGGGAACTGTGcctatTCCAAGATTCTGGCAGTCAGCAGCACAGACTCAGCCACAGATGTCATCAAGGTGGCACTGCAGCAGTTTGGTCTTTCTGGCTGTGTGAAAGACTACCAGCTGTGGGTCAGCTCAAGCAAAGATGAAGCGCCTTATCCTCTGATTGGACATGAGTATCCCTTCAGCATCAAAATGAGTCACATGCGAGAGCCAGCGTCCCAGTCGGGTGCAGTCGTAGTCCGGGAGTCGGCCTCCCCCCAACAGATACAGGGGGCTCTCCTCCTGGAACAGCTGCCTCTGGAGACACGGTGCCAGTTTATCCTGAAGCCCAGCCACATGGCCATGTGCCAGCAATTACTGGAACCCAGCCAAAAGCCCTTCAAGAGGAAAAGGTCGCTTATAAACTGGGCCTTCTGGCGTGGTTCTGGGAACCAGCTTGACAGCCTGCCACTGTCTCCCACCTCCCCCAATCCCGGGCGCCTCTTCGGTCTTCCTCTGAGCGTAGTCTGTGAGGATAACAGTCTGCCCAAGCCAGTCATGGACATGCTGAGCTTCCTGTTTCAAGAGGGCCCGTTCACAAGAGGCATTTTCCGCCGCTCTGCCAACGCAAAGGCCTGTCGAGAGCTGAGGGACAAGCTGAACTCTGGAGCCGAAGTCCTGCTGAACTCTGAATCCATTTTTGTGATGGCCGCTGTGTTTAAGGACTTCCTGAGGAACATTCCGGGCAGTCTTCTCTTTTCGGAGCTCTATAACAAGTGGGTCAATGTGATGGACCAAGGCAATGATGAGGAGAGGATACTGGCCATCCAAAGACTCATGGAACAACTTCCTAAAGAAAACATGCTCCTGTTGAGACACCTTTTTGGGGTTCTTCACTGCATTGAGCAGCACTCAGAGGAGAACCAAATGAATGCTTTCAACCTGGCTGTTTGCATTGCTCCCAGCATGCTTTGGGCTCCTGCACCATCAAGCCCAGAGACTGAGAGTGAAGGCACCAAAAAGgTTTCTATCGTTGTGCAGTTTGTCATAGAAAACTGCAGTAAGATCTTCGGTGAAGACGTTACTTCCTTGTTTGGGAGTTTGCCACAGAAGTGCAACGGCAGTGATAATGGATCAGATGTCTCCTCCTTCCAGATGAACGACTCCTCGTATGACAGCTTGGAAAACGAGCTGAACGATGATGCAGATTGTCCCTTCCCAGACCTGGGCCGAAAGGACAAGCAGGACAACCGGAGCAGGGACTCTGTCATCACCTTAAGTGACTGTGACTTAGACCAGCCGGAGACGGAGCCCATCCACCTGCAGCTGCCGCCGCTGTCCAGGCCGAGGCGGTTCACTCCTGCCGTGCGTCAGAGCAGGCCCCGCAGAGAGTGCCTGGACAAGGACTCTCTGTACCCCAGGGGCGCTAGAAGACACCGCCGCTGTTCCGAGCCGGCCATCGCTCTCTTGCCTTCAGGCTTGGGCCAACATTTGGAGAAACATGACACGGTGGTCCGCAAAGCCAGCTACGATGCTGTCATTACTAAAGTCGAGGACGGCTGTGTAGAGCAGCTTCACTGCTTACAGTTGGATGGACTCATGAATCTCAGCCCAAACACAGGCAGAGACTTGAGAACAGCAGGCAATGACCGTAGAGACTCACAGAACATTTCAAGACTAAAGCTCAAGCAGCCACCTCCCCTGAGGCTAAACCTCTGCCCGGCAACTAGCTGCTCCAGTCTGTCCTCCCCTGGTACCTCCCCATCTggctcctccatgagctccctGGACAGTGCTTTCTCCCAGTACTCTGATTACTCTGTCTTCACCCCCACTGAGCCCTGCTTCCCCAGTGGGACTCCCAGGGCACAAGGAGACTCTTCTCCACGGTTCAGCACCTCCACACATTCATCTGACTTGCTGTCTCCTGGACTGCACTCCCGTCCTGCTTCATGTTCCTCTCCCAAGATGGAAAAGGACAGGCTAACCAGCTCTCCCAAGGAAGGCTGTGACTGGGCCCTTCAAAGGAGTTGCCACAGTTTACATCCCAACACATGGCTCAAGAAGGACCGCAGCTGGTCCCTTCACAAGAAAGAAAGGAGTTGTGCGAAGCAGGAGAGTGTCCAAAGTAAGAGCCCAGACAGGCTGCCACTTTCTAGTGAATCTCCTTTAGAAGTATCTGGCCAGGaacatgaacaaacacacaaagaatcAGCCACGGTGGCCAAGAGACAACACAGCAAGCCACCTTCCTACCAGGAAGCCATACTGCAGATAAATCGGTCGAAGCCTCCCTTTTACCAAGTGAAACAAAAAGGTTTAACTGTAAAGGAGCTTAGGCAGCTCCATGAACATGGTGGCAGCAAGGAGGTTGTGCAACAGACAGGTGCGGTCTGTCTCCTCAAGCCACCAGCTCTCAGAGTACAGAAGAGTCCACCAGCAAGGAATGGCCCAGGCCAGTTGCCTCAAACTGTATTCTTTGGGCAAAGCAGTTCTTTGAGTGTCCGCCCCATGCGGAGGCAGCAGTCACAATCCTTCACTCTAGCCGAGGAGTGTCTCAGAAGCCCGGCGGCGCGGCGCTCTTCAGAACCGTCTGTCggctgtgggggtgggggggctgtgcCCTCTGACTTGGAGAGGCACAGACTCTTACTTGTTAAGGACAAAAAAGACTTGCAAGTTAAGAATCTGCAGGACCACAAGCTCAAGGTATCTGACGTGGACCAATCCTGCAATGGCCTGAGCCACAAGTCGGAGACCAATTTCTGTCTGTCTCCGTCCACCACCAAGGCAGTCAAAGACTACTTCTCTTGCACGGATGTGGAGAACTGTCTGAAGAAGTCTCAAGAGGTGGCCAATGCAGTCATTCAAGGCAAGAAAGAGTGGCACAGTAAGAGATGCAGTGACCCCAAGTTTGAGGACTTTGAACAAATGTTTTTCGCCGAAGAGTCTTATGTGTGAAAGGAACAGTGTAATGCTGGAcaattttgtaaataaacaggGATTTTTCACACTGTAAATGCTGCTTTATTATATAGCAACCATGCGCAGCTTCACATGTTTGTAAAGCTCAATGATGTGTGTGGCGCATTCCTAGTTAACAGagtatttaacttttatttttattttttattttgggggtgggggggagtagAAAACACTTCTGAATAATGATTAAAGGACAGAAATTATCTGACAAATTCTCACAATCCGACTCATAATTTAAGGTTTTTGTGTTTGAAAGCAATccactgtattaataataaaaacacaatattcacTGATTAAATGAGACACCAAACATGCAGTAGGCATTTCACATGCTCAAACACCATTATTTAcagcattataaatatatctatatcaaaTTATATTCCTCAGATAGTCTTTCAGTCTTTCCCACTTACATTTAAAGACCCCAGTTATCCTAATTCATGCATATAAAAAGTGAAGCAATACTCGGTAACATGTCCGACATAGCCAAAGTCAATTGGCACAgagacaataataacaacagtataattttgtgtgtgtaaggtcttttaatgtgaaaatatcaagctattcatattttatgttcacatgcaaaacaaaaacatggaagCTAGGGCTGCCAATGGTTTGGCATGATTGTTTTACAAACCGTTGAGTCCCGTGTCTTTAAGTGAAAGAAGAAGTCTGAAAGCTTTAGATCCAACACAATAGCCTGGAGGAGCAATACATCTTTGTCATTATATTCACCTTTGGTACAACACCTAGGTTACTGTGAGAAGCTAGAGCAAATGTGCTACAGCCAAAACTGGCAAAGGGTACCAAGCCATGAAAATCTGTATCCGTTTCTTTTTAAGTCTGTAAAGGAAAGGCTGTTTGAAAAAGGCTGAAATTCTTATTAATAAAGGGTTTGAGGCAGTGTATCCATTATTATGGTAtgctctatctatctatattgaTAAGGTTTGGCAGATCTGTGAAATGCCTCCTGTGTACTGTGAACTAGTTAGGAATGTGGGGAGTATTCATCTGGCCgcacagaaacatttaaagcacttaacAATCCAAAAGTTAAACGGAAAAGTCGCTACTTCGATAGATTTCGTACAGTACAGCAGAAGGGAGTATCCGTCTGGAGTATTATTTGAGGTGTCTCTGTACATTTGCAGTAATTATATTGTGGttgtttttcaaagtacattttgacattttaaagttgtattgtAAATCACTGCTGCCATAATGCATAAATGTAAGACTCTGAGAGAGGATGTTACAAGAACCttctctttttatatttgtatttcagttgaAGAATGTGTATAAtgctgtatgtatatttatacaatgcTACAGTACAAGTTCGCAGTTGTTGTTTGACCTGTAAGaaattaatctgtatttttgtacatgCTGATCCTGCTGCTGTTCCAGAAGTATATTTGCTACAAACGTGCACAATTTGTATACTGTGTATATCTATTGTAATGCATacgtataaaaaaataaagtatcaCACTTTTCATCTTTGAAGTGTCACAGAAGGCAATATGAATATCTGTCCTATCAGAGAGGCAAtgaatgtttatgtatttaataaacacaataataaca

Function

GO: NA

KEGG:

id description
K20641 ARHGAP20; Rho GTPase-activating protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014510 True 5543 mRNA 0.47 15 16041233 16067562

Neighbor

gene id symbol gene type direction distance location
AMCG00014511 rdx,LOC108434698,LOC107757412,LOC107588847,LOC108258936 coding downstream 48077 15973353 ~ 15993156 (-)
AMCG00014497 NA coding downstream 290068 15749334 ~ 15751165 (-)
AMCG00014498 NA coding downstream 343522 15679795 ~ 15697711 (-)
AMCG00014499 cnot11,LOC106582250 coding downstream 365106 15673026 ~ 15676127 (-)
AMCG00014491 NA coding downstream 414125 15619162 ~ 15627108 (-)
AMCG00014509 NA coding upstream 87696 16155258 ~ 16164120 (-)
AMCG00014515 pspc1,LOC108258933 coding upstream 164003 16231565 ~ 16250776 (-)
AMCG00014521 LOC106575534,LOC106575594 coding upstream 233071 16300633 ~ 16307473 (-)
AMCG00014520 NA coding upstream 240726 16308288 ~ 16308806 (-)
AMCG00014519 NA coding upstream 248972 16316534 ~ 16346355 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 337919 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 396319 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 516219 15522520 ~ 15525014 (-)
G70425 NA non-coding downstream 534722 15506304 ~ 15506511 (-)
G70407 NA non-coding downstream 654533 15383633 ~ 15386700 (-)
G70660 NA non-coding upstream 144982 16212544 ~ 16214127 (-)
G70679 NA non-coding upstream 214123 16281685 ~ 16281899 (-)
G70689 NA non-coding upstream 298562 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 398217 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 1216757 17284319 ~ 17284576 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 2907482 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4373696 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 4904147 11125029 ~ 11137086 (-)
G69537 NA other downstream 5243086 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 5980003 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 654511 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1379306 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1521705 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1923089 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 3134241 19201803 ~ 19203567 (-)

Expression


Co-expression Network