AMCG00014517


Basic Information

Item Value
gene id AMCG00014517
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16371753 ~ 16373757 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014517
ATGTTGGCAGCGCTGAGCGGGTTCATCAGACGGGCAGCGCTCCCATTGGCGTCTGTACTCGCACCCTGGACAGCTTCCAGCACCTACCGTGTCCCAGCTGGGTCTGAGCGGGGTCCGCAGTCCCCTCTTAACATGATCGCCGCAAGCCGAGCAGGACGATCTCTGGTAGAGGACTGCACGATGAGAAGCGACACGCGGGCAGTGCTGCTGGTGACTCTCGGCTGCTTGGCGCTGCTGACGCCGGACTCGACCGCGGCGCAGCCCGGGGGGAAGGTGTCCAAGCGGCCGCTGCGCCCTCGGCCCTGCCTGGACCTGCCGGAGGAGATCCTGGAGCAGATGTTCGGCCGCCAGTCGGTCGGGGTGCTGAGCGCCTTCCACCACGCCCTGCAGCTGGCGCCCCTGCAGGAGGACAACCGCACCTGCCCGTCCGCCGGCCGCCCCGCCGCGGAGCCCAGTGCGCGTCTCCCGGTCAACATCCTCAGCACCTCGCCGTGGGCGTACAGAATCTCCCACAGTCCCACGCGGTTCCCCCGGTACATCCCCGAGGCCTACTGCCTGTGTAAGGGCTGCCTGACCGGGCCACTGGGGGAGGAGAGCCTGCTGTACCGCAGCACCCCGGTCTACATGCCCTCGGTCATCCTGCGGCGCACAGCCTCCTGCTCGGGGGGGCACTACGCCTACACAGAGAGCTACGTCTCCATCGCCGTGGGCTGCACCTGTGTGCCCAACGTGGACAAGGAGGCCCACAGCAGCAACTCCAGTCTGGACAAGGCGGAGATCAAAGCCAGTGACAGCAGCCCTGACAAGCACTCTTAA

Function

GO:

id name namespace
GO:0006954 inflammatory response biological_process
GO:0005576 extracellular region cellular_component
GO:0005125 cytokine activity molecular_function

KEGG:

id description
K05492 IL17D, IL27; interleukin 17D

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014517 True 816 mRNA 0.67 3 16371753 16373757

Neighbor

gene id symbol gene type direction distance location
AMCG00014516 ift88 coding upstream 1126 16346034 ~ 16370627 (+)
AMCG00014513 NA coding upstream 93315 16258241 ~ 16278438 (+)
AMCG00014512 mphosph8,LOC106586589 coding upstream 163613 16191923 ~ 16208140 (+)
AMCG00014514 NA coding upstream 182092 16164845 ~ 16189661 (+)
AMCG00014507 NA coding upstream 217097 16139473 ~ 16154656 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding downstream 63420 16437177 ~ 16438737 (+)
AMCG00014522 NA coding downstream 74906 16448663 ~ 16450651 (+)
AMCG00014523 NA coding downstream 100037 16473794 ~ 16481556 (+)
AMCG00014531 wars2,LOC106531917 coding downstream 183807 16557564 ~ 16578157 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding downstream 210067 16583824 ~ 16611661 (+)
G70637 NA non-coding upstream 131415 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 453132 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 642836 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 846738 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 865705 15505814 ~ 15506048 (+)
G70735 NA non-coding downstream 116654 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 357121 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 655203 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 758306 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 876562 17250319 ~ 17253671 (+)
AMCG00014508 NA other upstream 232721 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 685854 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1129420 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2014885 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 2166739 14189564 ~ 14205014 (+)
AMCG00014525 NA other downstream 91864 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 991041 17364798 ~ 17487050 (+)
G71004 NA other downstream 1898097 18271854 ~ 18274360 (+)
G71525 NA other downstream 6481585 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10531120 26904877 ~ 26911237 (+)

Expression


Co-expression Network