AMCG00014519


Basic Information

Item Value
gene id AMCG00014519
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16316534 ~ 16346355 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014519
ATGAGCGCTTCTGAAGGAAAGACCATTGCTGTGATCGGGAGTGATATACAGCAATTATGTTGTTTCAGTGGTCTAATTGGGCGCTCCTGGGCCATGGTGTTTGTGAGTGGAGGATACAGAGTGAAGATCTATGACAACAAGCCAGGACATGCCAGCAAGGCCATTGAAGATATCAGTGAACAGCTGAAGGAGCTCAAGCAGGCTAACATGCTGAGAGGATCCCTGAGTGCTGAGGACCAGCTCGCCCTGATCAGCAGCCACGAGGACCTTAAAGGGACAGTAGAGGGCGCTTTCTTCATTCAGgagtgtgtgtttgaagaCCTACAGGCCAAGCACAGTGTGTTCCAGGCTGTGGAGAGTCTCGTGGGGGAGCGTGTGGTCCTCAGCACCTCCACCTCCTGTCTCCAGCCCAGCCAGGTGTTCTTGCCGGTGCAGAACAAGAAACGCTGCATCGTGTCTCACCCCGTTAACCCACCCTATTATGTGCGTCTGGTAGAGCTTGTTCCACACCCCGACACTGAGCCCTCTGTGGTGGATAGCACCTTTGCTCTGATGAAGGAAGTGGGCCAAGTGCCTGTGAGGCTGAGGAGGGAGATCGATGGCTTTGCTCTCAACCGGGTCCAGTACGCCATCATCGCAGAGGCATGGAGACTCGTCAAGGATGGCATTATTTCAGTGGAGGACATCGACCTTGTCATGACAGAAGGGCTAGGCATGCGCTATGCTTTCATTGGACCCATGGAAACTATGCACCTCAATGCGCAAGGCAAGGAAGGGATGAAAAGAGTCCTGTCATCTTTTGGGCCTGTACCAGAATTCTCTGGTGAGGAAGTGAAAAGTATTAATcagGACATGTGTGATTTGATTCCCAGTGACCCCCAGCACCTGACCGCGCGGAGAGAGCGGAGAGATCGCTGCCTCCTCGGCCTGGCTCAGCTGAAGAAGGGCCTGGAGTGA

Function

GO:

id name namespace
GO:0006631 fatty acid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0070403 NAD+ binding molecular_function
GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K13247 CRYL1; L-gulonate 3-dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014519 True 957 mRNA 0.54 8 16316534 16346355

Neighbor

gene id symbol gene type direction distance location
AMCG00014520 NA coding downstream 7728 16308288 ~ 16308806 (-)
AMCG00014521 LOC106575534,LOC106575594 coding downstream 9061 16300633 ~ 16307473 (-)
AMCG00014515 pspc1,LOC108258933 coding downstream 65758 16231565 ~ 16250776 (-)
AMCG00014509 NA coding downstream 152414 16155258 ~ 16164120 (-)
AMCG00014510 NA coding downstream 248972 16041233 ~ 16067562 (-)
AMCG00014518 NA coding upstream 29065 16375420 ~ 16376973 (-)
AMCG00014528 xpo4,LOC106582068 coding upstream 34539 16380894 ~ 16409288 (-)
AMCG00014527 LOC104951642 coding upstream 65381 16411736 ~ 16420491 (-)
AMCG00014530 NA coding upstream 79040 16425395 ~ 16431657 (-)
AMCG00014526 NA coding upstream 92940 16439295 ~ 16446968 (-)
G70679 NA non-coding downstream 34635 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 102407 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 613220 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 671620 15643619 ~ 15644914 (-)
G70420 NA non-coding downstream 791520 15522520 ~ 15525014 (-)
G70689 NA non-coding upstream 19769 16366124 ~ 16369464 (-)
G70731 NA non-coding upstream 119424 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 937964 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 1003081 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1657455 18003810 ~ 18004023 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3182783 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4648997 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5179448 11125029 ~ 11137086 (-)
G69537 NA other downstream 5518387 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6255304 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 375718 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 1100513 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1242912 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1644296 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2855448 19201803 ~ 19203567 (-)

Expression


Co-expression Network