AMCG00014524 (sap18,LOC107597378,LOC107668906,LOC107569214)


Basic Information

Item Value
gene id AMCG00014524
gene name sap18,LOC107597378,LOC107668906,LOC107569214
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16437177 ~ 16438737 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014524
ATGGCTGTAGAATCTCGAGTCACACAAGAAGAAATCAAGAAAGAGCCCGAAAAACCAGTCGACAGAGAAAAGACATGTCCTCTGTTGCTGAGGGTGTTCACCACTAACAATGGCAGACATCACAGAATGGACGAGTTCGCCAGGGGAAACGTGCCTTCCAGCGAGCTGCAGATCTACACCTGGATGGACGCAACTCTGAAAGAACTGACCAGCCTGGTGAAAGAAGTGTATCCGGAAGCTCGGAAGAAAGGCACGCATTTCGGCTTTGCCATAGTATACCCTGATCCTAAAAGACAAGGCTACAGagtAAAGGATATTGGCAACACAGTGTCTGGGCGGAAAGGGGCAGATGACTCTATGACACTGCAGTCCCAGCGGTTCCAGATAGGAGATTACCTGGACATCGCTATAACACCCCCGAACAGGGCGCCTCCTCTCCCGGGACGCATGAGGCCCTACTGA

Function

symbol description
sap18 Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human SAP18 (Sin3A associated protein 18).

NR:

description
PREDICTED: histone deacetylase complex subunit SAP18

GO: NA

KEGG:

id description
K14324 SAP18; histone deacetylase complex subunit SAP18

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014524 True 462 mRNA 0.52 4 16437177 16438737

Neighbor

gene id symbol gene type direction distance location
AMCG00014517 NA coding upstream 63420 16371753 ~ 16373757 (+)
AMCG00014516 ift88 coding upstream 66550 16346034 ~ 16370627 (+)
AMCG00014513 NA coding upstream 158739 16258241 ~ 16278438 (+)
AMCG00014512 mphosph8,LOC106586589 coding upstream 229037 16191923 ~ 16208140 (+)
AMCG00014514 NA coding upstream 247516 16164845 ~ 16189661 (+)
AMCG00014522 NA coding downstream 9926 16448663 ~ 16450651 (+)
AMCG00014523 NA coding downstream 35057 16473794 ~ 16481556 (+)
AMCG00014531 wars2,LOC106531917 coding downstream 118827 16557564 ~ 16578157 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding downstream 145087 16583824 ~ 16611661 (+)
AMCG00014537 NA coding downstream 253275 16692012 ~ 16719737 (+)
G70637 NA non-coding upstream 196839 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 518556 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 708260 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 912162 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 931129 15505814 ~ 15506048 (+)
G70735 NA non-coding downstream 51674 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 292141 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 590223 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 693326 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 811582 17250319 ~ 17253671 (+)
AMCG00014508 NA other upstream 298145 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 751278 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1194844 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2080309 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 2232163 14189564 ~ 14205014 (+)
AMCG00014525 NA other downstream 26884 16465621 ~ 16469209 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 926061 17364798 ~ 17487050 (+)
G71004 NA other downstream 1833117 18271854 ~ 18274360 (+)
G71525 NA other downstream 6416605 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10466140 26904877 ~ 26911237 (+)

Expression


Co-expression Network