AMCG00014525


Basic Information

Item Value
gene id AMCG00014525
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16465621 ~ 16469209 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014525
aaaaaataaaatcttgcatTTTCTTGTCGTTGGCCATTTAAAAACTACAGACCCCAGAGTCCTCTTAGAAGTTGTAGTTGAAAGCGTGATCTTCACAAAATTGTGCAAGGAAGGACGTGTGTGAGCTCTATACTCTGGCAAAGGAGATATAAGACAGACAACCCAACCGGAAAATGGCCAGTTTACCAGCAGCGAGCTGCGAGGCCAGCAGCGGCCAGTGCGCCCAGGAGCCGCAGGACACGAAGCCCCTGAAGGCGTGCTGTGCGTGTCCGGAGACCAAGAAAGTCAGAGATGCCTGCATTATTGAGAAGGGCGAAGAGGGCTGCAGAGATCTGATCGAGGCTCACAAGGAGTGTATGAGGGCCCTGGGATTTAAAATCTAACCACATCTTAACAAAACGTAGTGGGACTGAGCATTTGTGCCATTTCTTGATTGACCATCCCAGTTCATACCAAAGGTGTTCAGTTGGGTATTTAAGGACTCTGAGCAGtgTGTTCCTGGTGTCTGGTGACTGAAATGCTGTGGTGATCCTctgagctttatttatttaattgcaatggAATATTTGTGATGCTCATTTCTATCGACTCCAAagtgtatgtaaatgtttattctcTCCAAAACTGTGGTATTTCctaaaataatgagaaaatagtctataatttaataaaaaaaaatcctgaacaTTTTGGTTTCCAATCCTTTCTTGTTTGTGGTGTCAGTCAGACTCAGAATTTAGTGGCCTCTGTACTGTTTGTCAAAGTTGTTTTAACTGGAATAACACAATATGCTG
>TU88385
CCTCTTAGAAGTTGTAGTTGAAAGCGTGATCTTCACAAAATTGTGCAAGGAAGGACGTGTGTGAGCTCTATACTCTGGCAAAGGAGATATAAGACAGACAACCCAACCGGAAAATGGCCAGTTTACCAGCAGCGAGCTGCGAGGCCAGCAGCGGCCAGTGCGCCCAGGAGCCGCAGGACACGAAGCCCCTGAAGGCGTGCTGTGCGTGTCCGGAGACCAAGAAAGTCAGAGATGCCTGCATTATTGAGAAGGGCGAAGAGGGCTGCAGAGATCTGATCGAGGCTCACAAGGAGTGTATGAGGGCCCTGGGATTTAAAATCTAACCACATCTTAACAAAACGTAGTGGGACTGAGCATTTGTGtgTGTTCCTGGTGTCTGGTGACTGAAATGCTGTGGTGATCCTctgagctttatttatttaattgcaatggAATATTTGTGATGCTCATTTCTATCGACTCCAAagtgtatgtaaatgtttattctcTCCAAAACTGTGGTATTTCctaaaataatgagaaaatagtctataatttaataaaaaaaaatcctgaacaTTTTGGTTTCC

Function

GO:

id name namespace
GO:0046688 response to copper ion biological_process
GO:0006825 copper ion transport biological_process
GO:0005758 mitochondrial intermembrane space cellular_component
GO:0016531 copper chaperone activity molecular_function

KEGG:

id description
K02260 COX17; cytochrome c oxidase assembly protein subunit 17

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014525 True 794 mRNA 0.43 5 16465621 16469209
TU88385 False 569 TUCP 0.45 4 16465681 16469113

Neighbor

gene id symbol gene type direction distance location
AMCG00014522 NA coding upstream 14970 16448663 ~ 16450651 (+)
AMCG00014524 sap18,LOC107597378,LOC107668906,LOC107569214 coding upstream 26884 16437177 ~ 16438737 (+)
AMCG00014517 NA coding upstream 91864 16371753 ~ 16373757 (+)
AMCG00014516 ift88 coding upstream 94994 16346034 ~ 16370627 (+)
AMCG00014513 NA coding upstream 187183 16258241 ~ 16278438 (+)
AMCG00014523 NA coding downstream 4585 16473794 ~ 16481556 (+)
AMCG00014531 wars2,LOC106531917 coding downstream 88355 16557564 ~ 16578157 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding downstream 114615 16583824 ~ 16611661 (+)
AMCG00014537 NA coding downstream 222803 16692012 ~ 16719737 (+)
AMCG00014538 NA coding downstream 252989 16722198 ~ 16731869 (+)
G70637 NA non-coding upstream 225283 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 547000 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 736704 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 940606 15522525 ~ 15525015 (+)
G70415 NA non-coding upstream 959573 15505814 ~ 15506048 (+)
G70735 NA non-coding downstream 21202 16490411 ~ 16491118 (+)
G70776 NA non-coding downstream 261669 16730878 ~ 16733637 (+)
G70835 NA non-coding downstream 559751 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 662854 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 781110 17250319 ~ 17253671 (+)
AMCG00014508 NA other upstream 326589 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 779722 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1223288 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2108753 14302447 ~ 14356868 (+)
AMCG00014456 NA other upstream 2260607 14189564 ~ 14205014 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 895589 17364798 ~ 17487050 (+)
G71004 NA other downstream 1802645 18271854 ~ 18274360 (+)
G71525 NA other downstream 6386133 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10435668 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11366294 27835503 ~ 27841871 (+)

Expression


Co-expression Network