AMCG00014526


Basic Information

Item Value
gene id AMCG00014526
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16439295 ~ 16446968 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014526
CGCCAAATTCGAAGATATCCATTTATGCTTCATAACAACTAGTTTTTCAGAATGGATATTTCAGGACATTTCTTCAGAAAGCTACGCCATTTAGCTGTTTTCTTGGAAGGTGAAACGAAGAACCTTGAAAAAGCTAATCTGAACAATGAGGAtgACGCTTGTGAAGGAGGGGTGCGAGCTCTTCATGAACTGCATTCAGATGTCAGAGCCTTGAAAGCGCAGGTTCAAAATCAGCTTGTCACCACTCAGTCCAAGGGCAAGGATGTCAGGGATTTCATTCGCTCAACTCTTATCCTGAAGCAGAGGACAACGGAGGACATTGAGAGGATGAAAAGACACTTTGAGAAGTATGGGTACAAGCCTGTGCCACAGAATCCAGTAGAGGTGAATGGCTGTGAAGCAGCCGCAACAGAGAAGAGTGAAGATGCTGTTAGGGAGAAGCAGAGAGGTGAGGATATGGATGCAGAGCAAGCAGGTGAGGAAGAGGATCCAGGAAAGCAGCCCTGCACGACCCCTACAAAGAACCCTCTCCTTGAGACCGACCCCCTGCGCACCCCTCGGCTGTCTGACTTTGGTCTGTCTGAGTACCACTTCCCCAGTGCCTGGGGGGTGTCGGAGAAACCCGCGGCCACGCAGTCCAGCCAGAGCCAGTGCCCCCCCATCACTGTGTCCCTCCCTTCACTTCCCAAAACCCCCAAGTGTGAGCTGAAGATGGACGACGAGGCCTTCACACCCAGGCTGGAGGGCTTTGGGATCAGCGACTACACTATGTGCCTGAACAACGACTTTACCATGGACCTGCTCCGCAACAAGCCCAGCCAGCCTGCCAGCTTTGCGGTACAATCTGGATATCAAGCAGCCATGAGAACGGCACAGGATCCCTCTACACCTGCACAGAATAAGCACATGGAAGAGAATGctgtcATGAATTCCCCTGTGCCCCCTGTCTTTTGCACCCCGggattcaaaattaataaaaagcaagCTCCACCCTCCCCCCCAAACCTCAAAAAAACAGAgccaacacacaacaacagcTCCACCCCTGAACTTCCATCTTTTGAGACGCCATTTTTCAAGAAGCTCATTCATGACAGGGGACGTGAGGCTGCTGGACCCAAGGAAAAGGCTTTCAGTCACTTGCATCCTCAGTCACCTGGGGTCCCAGTCTACAATAACCATGCTTCATGTGATGTCCCAACGTTCTCAGACATACAGCAGTATAAAAATGATGCTATTCCAGAGCTACCAAACTTTCAGTCTTTGTTTTGCAGTAAATTAACCCATTTCCAAGCCCCAGGTGATGAACTGAGTATGTCCCCAGGGAGAGGGATAGCTGACTTGGATCTACAAATGCCAGAGAGGCCAGACTTCAGCTCTGTTACAGAGGATATCTTtaagcaCCTTTCCCAGTGTAATGCAAAGCCTTCACTCCATGTGTCTCCAAAGCCAAGACCAACCATTCTGAAAACAGAGCAAGACGGAAAAGAGAATAGGGTTCAGAGTCTTGCCACAGTGTCAGAAAAGGATTTCTTGACCCTACCAGATTACCTGAGGCAGATACCTCTGGCCAGCCTCAATCAGGCTATTCAGAGGATAAACAGAGCTCTGGACCTTAACTACACTGGAGCTTATGTGGACTCTCCGGCAAGCCTGATGGAGGAGTCCGAGCTCAAGAGTGTAATAGATGTGGGGCCAAAGTCAAACATCTACTTCCTGTGTCTGGTGGAGCTCAAAAGGCTGAAGAAGATGAGGACCACTGGCACCAGCACTGTGTATAAAGTAGTCCTCTCTGCATGAGAATTAACACTGACAAACTGCTTCAGACCTGAGGAGTGAAACAGGAAGACTCCAGCATGCAGACTTTGCAGGAGCTATAAAACTCCAGGACATTCGGGAAGCAACTGGGAAGTCTTTCAGTGCTTCGTAAAGCTGGGCAATTGCTATCCTGCAGAGAATATtgtataacaacaacaaaacaaactgtccACAGTAATTCCGTCACGGCATGCTCTAGAATCAGAACCACAGTAGCCTCTTGAGTATCAGCGACAAGATGCCACAAGAAAACTTCAGGCAATGAAGGAGATATGtcagtcattaaaaataattagcacACTGTCCAAATAATTGTGAATTTTTCACACAGTGGTTGATAGTCtccaaattaaatgttcttgATGTGAGATTGCTTGTTCTACCTTTAACTAATGGCAGTGCTTTGTACAATTACCTTTTTGTCAGCATTTTTACcttagtttatgtatttaaacctTGTTCTTATGATCTACATGATTACTTGTCTTTAACTAGTAATTTCTATTTTCTGCACTTTGGAATGGataataaactttattaaaaacatagcTTAAGTGACTTAAATTGGTATTATA

Function

GO:

id name namespace
GO:0005694 chromosome cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component

KEGG:

id description
ko03420 Nucleotide excision repair
ko04110 Cell cycle
ko04111 Cell cycle - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014526 True 2393 mRNA 0.46 13 16439295 16446968

Neighbor

gene id symbol gene type direction distance location
AMCG00014530 NA coding downstream 7638 16425395 ~ 16431657 (-)
AMCG00014527 LOC104951642 coding downstream 18804 16411736 ~ 16420491 (-)
AMCG00014528 xpo4,LOC106582068 coding downstream 30007 16380894 ~ 16409288 (-)
AMCG00014518 NA coding downstream 62322 16375420 ~ 16376973 (-)
AMCG00014519 NA coding downstream 92940 16316534 ~ 16346355 (-)
AMCG00014529 NA coding upstream 4913 16451881 ~ 16457368 (-)
AMCG00014533 NA coding upstream 32919 16479887 ~ 16496581 (-)
AMCG00014532 NA coding upstream 50319 16497287 ~ 16504076 (-)
AMCG00014534 hao2,LOC102793069 coding upstream 60419 16507387 ~ 16512051 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding upstream 336109 16783077 ~ 16785522 (-)
G70689 NA non-coding downstream 69831 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 157396 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 225168 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 735981 15700208 ~ 15703314 (-)
G70458 NA non-coding downstream 794381 15643619 ~ 15644914 (-)
G70731 NA non-coding upstream 18811 16465779 ~ 16469228 (-)
G70876 NA non-coding upstream 837351 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 902468 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1556842 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1882229 18329197 ~ 18331100 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3305544 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4771758 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5302209 11125029 ~ 11137086 (-)
G69537 NA other downstream 5641148 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6378065 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 275105 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 999900 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1142299 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1543683 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2754835 19201803 ~ 19203567 (-)

Expression


Co-expression Network