AMCG00014534 (hao2,LOC102793069)


Basic Information

Item Value
gene id AMCG00014534
gene name hao2,LOC102793069
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16507387 ~ 16512051 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014534
ACCCGCCAGTCGTTGCAAAGAGATGTCGATGGTATGCCTGACGGACTTTGAGGCGTATGCTAAAGAGCATCTCCCAAAAGCCACCTGGGATTACTATGCAGCCGGAGCAGATGAATGCTGCACAAGGGACGATAACCTCCTGGCATATAAAAGAATCCGTCTGCGCCCACGTATGCTGCGGGATGTTTCTGTCAGTGACACCCGGACAACTGTGCAGGGCACAGAAATCAGCTTCCCCGTTGGTATTGCACCCACTGCCTTTCACTGCCTGGCATGGCATGATGGCGAGATGAGTACAGCGAGAGCGACTGAAGCAGTGAACACCTGTTACATTACCAGCACCTACTCCACTTGCTCAGTGGAGGAGATTGTTGCTGCAGCTCCTAACGGTTACCGCTGGTTTCAGTTGTACGTGTACCGGAACCGCAAGGTGTCCGAGCAGATCGTGCACCGTGTGGAGGCGCTGGGCTACAAGGCTCTGGTGCTCACCGTGGACGTGCCTTACACTGGCAAACGCAGGAATGACATTAGGAACCAGTTCAGACTGCCACCACACCTGAAAGTAAAGAATTTTGATGGGGTGTTTGAGGAGAACAATGGCCCTGAGGAGTACGGCATCCCTGCCAACACGCTGGACCCCTCAATCAGCTGGAAGGACATCTACTGGCTGCAGTCCTTGACTCGACTGCCAATCATTATCAAGGGGATTCTGACCAAGGAGGACGCAGAATTGGCAGTGGAGCATGGAGTGCAGGGCATCATCGTCTCCAACCACGGGGGCCGGCAGCTAGATGGGGGTCCTGCCACAGGTAGAATTGAAGTGTATCTTGATGGTGGGATCCGCACAGGAAGCGATGTGTTAAAGGCTCTTGCCCTTGGGGCGAAGTGCGTCTTCATAGGAAGGCCAGCTGTCTGGGGCCTTGCTTACAAGGGAGAAGAGGGAGTCCGGGAGGTGTTGCAGATTCTCAATGATGAATTTCGCTTGTCAATGGCTCTAGCTGGTTGCAGGAATGTCTCCGAGATCAACAGAAACCTGATTCAGTTCTCCAAGCTT

Function

symbol description
hao2 Predicted to enable FMN binding activity and oxidoreductase activity. Is expressed in lens; liver; pronephric duct; solid lens vesicle; and yolk syncytial layer. Orthologous to human HAO2 (hydroxyacid oxidase 2).

NR:

description
PREDICTED: hydroxyacid oxidase 2 isoform X2

GO: NA

KEGG:

id description
K11517 HAO; (S)-2-hydroxy-acid oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014534 True 1054 mRNA 0.54 7 16507387 16512051

Neighbor

gene id symbol gene type direction distance location
AMCG00014532 NA coding downstream 3311 16497287 ~ 16504076 (-)
AMCG00014533 NA coding downstream 10806 16479887 ~ 16496581 (-)
AMCG00014529 NA coding downstream 50019 16451881 ~ 16457368 (-)
AMCG00014526 NA coding downstream 60419 16439295 ~ 16446968 (-)
AMCG00014530 NA coding downstream 75730 16425395 ~ 16431657 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding upstream 271026 16783077 ~ 16785522 (-)
AMCG00014541 man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087 coding upstream 287990 16800041 ~ 16814919 (-)
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding upstream 314594 16826645 ~ 16955741 (-)
AMCG00014542 NA coding upstream 454741 16966792 ~ 16973783 (-)
AMCG00014543 NA coding upstream 464359 16976410 ~ 16977779 (-)
G70731 NA non-coding downstream 38159 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 137923 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 225488 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 293260 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 804073 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 772268 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 837385 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1491759 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1817146 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 2152213 18664264 ~ 18664631 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3373636 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 4839850 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5370301 11125029 ~ 11137086 (-)
G69537 NA other downstream 5709240 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6446157 10058097 ~ 10061230 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other upstream 210022 16722073 ~ 16737877 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 934817 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 1077216 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1478600 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2689752 19201803 ~ 19203567 (-)

Expression


Co-expression Network