AMCG00014538


Basic Information

Item Value
gene id AMCG00014538
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16722198 ~ 16731869 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014538
ATGGCTTCTCACGGGGGGCCGGGGCAGTTCCCTCTGTGCAGCCGCGACTTCCCCTCGGCTCTGCAGCGCGGTTTCCAGGAGCTGTGGCAGGCCCAGTGCCTTTGCGACATTCGTCTGTCTGCTGGAAATGAGACCTTTTCGGCGCACAGGTCGGTCCTAGCCGCAGCAAgttattatttcagaataatgtTTACAACGGACATGAGGGAGAAACACATGGACTCGGTAGAGCTAAAAGGGGTCTCTGCAGCGGGTCTGAAATGTGCCTTGGATTTTATTTACACGTCCCACCTGAGCGCAGACTTTGAGAGCCTGGAGGACGTGCTGCTCACCTCCACCCACCTGCAGATCCCGCATCTCACGCAGTGCTGCGCCGAGCTGCTGCAGCAGTCCCTGAGGGTGGACAATTTCAGCGACATCCTGTGCCTGTCCGATAAATACGACCTGGTCTCTTTAAAATTGCAGTGTTTCTCGTTCATTTCACAAAACCTAGATGTGATTTTGGAAACGGCCCAGACCTCTCTGTTGCAGGTGGACGGGGACGCCGTTTTGGGTGTTTTGGAGAGAGATGACGTCAGTCCGCAGGTCAGCGAGAGAGCCATCCTGGAGCTGTCGCTGAAATGGTTAAATTACGACCTGGACAACAGGCTGCCCTACCTGGAAGACCTGATGAAAGAAGTCCGCTTGGGTCTGATCTTCCCTCCAGAGTGCTTGTCCGAGGATGACTTCAGAGACTCTGTGGAGCTGGTGAAGGCTGTCCCAAAGGGTGACACGTACATTCAGATGATGTCTAAAGAAGATCTTCGGTTTCAGATTGACAGTCCATATCAGAAGTGGTTCAAAATAAGGTCATCGCGAAAAGGGGTGCTGGCAACTTGTGgGGGACAAAATTCCTGGTTCAACAGCAGCCACGAAGAAGAGGCCACCGCTTCAGTGCGGCGATATGACCCTCGCTTTGACAAGTGGACTCGCCTTGCAGACATGAATGTTCGTCGTCGTCGTTTCCACTGCAGTGCCATGGGGGGTCGTATCTATGCTGTCGGAGGAAGAGGGGAAGGTGGCATCCTGTGCTCTGCAGAGTGTTACAGCCCTGCTGATGATGAGTGGACCCATATCCGAGCCTTGCCCTGCCCACTGTCCAGCCACGCCGGCGCGGTGCACGGCAATAAGCTGTATGTCTGCGGGGGCTCCTCGGGGGAGGTCTTCTCTGACTCAGTGTACGGGTATTGTCAAGAGCTGGACGAGTGGACAACCCTGCCCCCTCTGCGGTATGCCAGGGGCTTCCACAGCATGATCTGCATAGAGGACAACATCTACGTCATGGGTGGCGTCCTGATCAGCAGAACCCAGGCCCAGAGGCGCTCCTACTCTGACGTCCTCGTGACAGAGCGTTACTGCCCCATCTCGAACCAGTGGACGGAGCTCAGCCCTCTTCCTGTGGGTCACAGCCAACATGGGTGTGCTGCCCGGGGTTCCTACATCTATATCATTGGGGGCTTCTCCTGGACAGAGGAGGGCTTCCTCAGCAGTGTCCACGTGTATAACATCGAGACAGACACCTGGAGCACGGGCCCTACACTGCCACGGCCCCTGGTCGGGGTTTCCAGTGGGACTCTTACCCTCCCTCACCATCTGTCGCTGACAAACACAAAGCCCGAGCAGCCTGCTGTGTACCTGAGCAGGAAGAAGAGGCAGCGACAAATGAGCTCCACCTGCAGCCCACCGCAGATGAACTCGTTGAACAGCCGGAGGAGGTCAGTGCCGCCTCCCCTGCGGTCTCCCCTGGAACCTGAGGAGGAAACAGACAGCAACAAGAGTGAGACGGACAAGACCCTCCTCACGAATATAATGGAGAAGAATCACAATGAAAAAGACTTTGACAGTGCAGTCAAGCAGCGACACAGCAAGCAGCCTCTGGTCCGGGCTGTAGCGCACACACAGCACGTCCTCGTCCAGCTGCAGCGTGCGAACGTGATTGACTGTCAGCCTCctgacaacacacacaggagTCAGGACACTGTCACTGAGGACAAGCACTGA

Function

GO: NA

KEGG:

id description
K10523 SPOP; speckle-type POZ protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014538 True 2040 mRNA 0.56 8 16722198 16731869

Neighbor

gene id symbol gene type direction distance location
AMCG00014537 NA coding upstream 2461 16692012 ~ 16719737 (+)
AMCG00014535 tbx15,LOC107712261,LOC107724509 coding upstream 110537 16583824 ~ 16611661 (+)
AMCG00014531 wars2,LOC106531917 coding upstream 144041 16557564 ~ 16578157 (+)
AMCG00014523 NA coding upstream 240642 16473794 ~ 16481556 (+)
AMCG00014522 NA coding upstream 271547 16448663 ~ 16450651 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding downstream 5614 16737483 ~ 16765552 (+)
AMCG00014552 NA coding downstream 597044 17328913 ~ 17332815 (+)
AMCG00014560 NA coding downstream 1047696 17779565 ~ 17780081 (+)
AMCG00014565 NA coding downstream 1217691 17949560 ~ 18029896 (+)
AMCG00014564 NA coding downstream 1306239 18038108 ~ 18067182 (+)
G70735 NA non-coding upstream 231080 16490411 ~ 16491118 (+)
G70637 NA non-coding upstream 481860 16237110 ~ 16240338 (+)
G70562 NA non-coding upstream 803577 15918413 ~ 15918621 (+)
G70496 NA non-coding upstream 993281 15727434 ~ 15728917 (+)
G70418 NA non-coding upstream 1197183 15522525 ~ 15525015 (+)
G70835 NA non-coding downstream 297091 17028960 ~ 17097964 (+)
G70846 NA non-coding downstream 400194 17132063 ~ 17173062 (+)
G70865 NA non-coding downstream 518450 17250319 ~ 17253671 (+)
G70883 NA non-coding downstream 584384 17316253 ~ 17317556 (+)
G70897 NA non-coding downstream 617567 17349436 ~ 17350952 (+)
AMCG00014525 NA other upstream 252989 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 583166 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 1036299 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 1479865 15221914 ~ 15242333 (+)
AMCG00014461 NA other upstream 2365330 14302447 ~ 14356868 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other downstream 632929 17364798 ~ 17487050 (+)
G71004 NA other downstream 1539985 18271854 ~ 18274360 (+)
G71525 NA other downstream 6123473 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 10173008 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 11103634 27835503 ~ 27841871 (+)

Expression


Co-expression Network