AMCG00014539 (wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854)


Basic Information

Item Value
gene id AMCG00014539
gene name wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16722073 ~ 16737877 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014539
CATGAGTGCAGGGAAGGAGACGGAAGGAATGCACCGCTAAATATTCAAACGCTTTGTACACGATAGAAACAGCGAAACCTGTCGAATTCGGCCATAGGGTCTTTCCTCGATAAGGAGTAAACGGGCACTAGGTTGTCATGGGATTGACAAAGCAGTACTTGCGGTATACCGCCAGTGCTGTTTTTGGAGTGATAGGGAGTCAGAAAGCCAACATTGCATATGTCACCttgaggggaggagagaggggtcGGTATGTAGCAGTAGCAGCCTGCGAGCATGTCTTCATATGGGACACACGCAAAGCTGAAAAGATTCAGATTCTCCAGGGTAATAAACAGGAGGTGACCCATCTCTGCCCCTCTCCGGATGGGGTTCATTTGGCGGTGGGCTATGAGGATGGCTCTATCCGTGTCTTCAGCCTGCTCAACGGAGAGAGCAATGTCTCCTTCAATGGACACAAGTCCGCGGTCACTGTCATGAGATACGACCACCTTGGGGCACGGCTTGTATCAGGTTCAAAGGACACAGATGTGATTGTGTGGGATGTGATCAATGAATGTGGTTTGTACCGCCTGAAGGGACACAAGGACGCCATCTCCCAGGCCGTGTTCCTGAAGAACCGGAACCTTCTGGTTACTAGTTCTAAAGACACTTTTGTGAAATGGTGGGATCTGGACACACAACACTGTTTCAAAACCATGGTTGGACATCGTAGTGAGGTGTGGGGACTGGTGCTGCTGAATGAGGAGAAGAGGATTGTCACCGGCTCTGCAGACAGTGAGCTCAGAGCGTGGGACATCAGCTACTTACAGGAGAACAAAGAAGTGGGGGAGCCAGAGGTGAAGAAGGTGAAAGGGTTGCTGGATGAACCTGAAGACCAGGAGGAGGATCTTGATGAGAACCCTGAGGAGCGAATCCTGAGCTGTCAGAAAGCAGGCTCCATCCTACGAGAAGGGAGAGACAGGGTTGTGTCCATGACCACAGATCTGAAATCCAAAGTGTTAGCTTGTCACGGAACAGATGCCATTCTGGAGGTATTCAGTGTCCTCTCCCAAGATGAGGTACAGAAGTGTAGAGAGAAGAAACtgaagaaagcaaagaaaaaggcCAAGTCTCAGGATGGGGTGGTTGATGAGGAGCCAGTGGTGGAGATGAAACTGGGAGATGAGATCCAGAGACTCACTAAAGTCAAGGCTTCTGACAAAATCAGATCCCTGGACTGCTTTCTGTTCCCAAGCGGAGAGCTGAAGGTATCTCTGCTCCTCCAGAACAACACGGTGGAGTGCTATTCCCTCCGCACCACACAGAAGAATCCCGAGGGCACCAAGACTGCCCGGCTGACTCTGAGTGGCCATCGCACCGACGTTCGCACCCTCGCCTTCAGCTCCGACAACATCGCCATCCTGTCCGGCTCGGCAGAGACCGTCAAAGTCTGGAACAGatcAACTCTGCAGGTGATCCGTACGATGGCCTGTGAATACGCCCTATGCTCCCTCTTTGTCCCTGGAGACAGACAGGTCATCATAGGAACCAAGAGTGGGAAGATCCAGATTTTTGACCTGGCGTCCGGCAGCCTTTTGGAGACCACTGACGCACACGAGGGAGCATTGTGGTCCATCTGTCTTTCTCCAGATCAGAGAGGGATTATGACTGGAGGTGCCGACAAGACTGTGAAGTTCTGGGAATTTGAGCTGGTCAAGGACGAGAACTCCGGATCAAACAAGAGGCTGACAGTCAATCACGTTCGCACGCTGCAGCTGGACGAGGACGTGCTGTGTGTGCGCTACAGCCCGGACCAGAGGCTGCTTGCTGTGTCGCTGCTTGACTGCACTGTCAAAGTCTTCTACACAGACACCCTCAAGtttttcctgTCTCTGTATGGACACAAGCTGCCAGTACTGTGCCTGGATATTTCTCATGACAGCACACTCATAGCCACGGGCTCCGCTGACAGGAATGTGAAGATTTGGGGTCTGGACTTTGGAGATTGTCACAGGTCACTCTTTGCTCATGATGACAGTGTCATGTTCCTGCAGTTCGTACCCAAAACTCATCTGTTTTTCACAGCCGGGAAGGACAAGAAGATCAAACAGTGGGACGCTGACAAGTTTGAGCACATCCAGACCCTGGAGGGCCATCATCGAGAGGTGTGGTGCTTGGCTGTGAGCCCCAGTGGAGATCACATTGTGTCATCGTCCCACGACAAATCCCTGCGTCTGTGGGAGAGAACTAGGGAGCCCATCATCTtggaagaagagaaagaaatggAACGAGAGGCGGAATTTGAGGAAAGCCTGGCCAAAGGTGATGAGCCAGTGGTTCCAGGGGAGACCGCAGGGGAGGCGGCACTGGCGGGGAAGAAGACCATTGAAACTGTCAAAGCTGCAGAGCGCATCATGGAGGCCCTGGAGCTCTACAGGGACGAGAGCAAGAAGCTGCAGGAGCACGAGGCAGCCTGTGAGGCAGCAGGCAAGAAGctaCCACCACCTAAAATGAGTCCCATCCTAGTGGCCTTCGGAAACATTTCGCCCTCTCAGTATGTCTTAGATGTCATCAGGAAAGTCAAATCCAGTGAACTGGAGGAGTCCCTGCTGGTCTTGCCGTTCTCCTACATACCTGACCTCCTCCGGCTGTTCAACGAGTTCATCTGCGGTGGGCTGCAGGTGGAGCTCATTTGTCGCTGCCTCTTCTTCCTGCTCAGGATACACTTTGGACGAATCACAAGCAATCATCTGCTCCTGAACGTGATCAACAGCCTGAGGACTAACACCATCTCTAAAGTGGAGCAGATTAGGgacGTTCTTGGATTTAACCTGGCAGGGCTGAAGTTTTTACAGCGAGAGATTGAAGACAAGGAAGATGTGACTTTCTTTGCTGATGCCACAGATCGGTTCAcggaaaagaagagaaagagaaagaagcgGGAGCGAGCCATTCTCGTAGTTTCCTGAACTGAACAATAAGACACTGTCCCTTCCAGGACCTGACTTTTTTTatctataataaaaaatagccTGTTTCTGTATCTGTACAAGTCCATAAGGATGTGACCTAACagctgaaaataattataaataaaatgagtaaACATacctgaaaatgtttctttatatataaatacagcagcGTTACAGCCTCTTTTCAGACATAAATTTAATGATTGCACATGTTGAACATAttatacaatgcatgatattttaaatattaaattataagaTTTGTTATTGCAGTCTTTActgtatgttaaataaaaatgttggcAGTCTAGCAGCACATTAAGACTACACAAGGTCAAACTTTCATGTGCTTCAGCTCGAACCAAACCTGGTGACATCAGCCTTCCAGtgcagcaaaaaaacaacactctCATAACATACATTAACAGTAGATACAGTGGCCAGGAGGAATGCAGTAAGTTTCCATCAGCTTTCGAAAGAGAGATCTTTTAACTTGGCCAATATGTTTCTTGGTTTGTTAGTCTGGAATGGATTTCAGTCCAGAACAAATCTATCCTACTCCATTCCATCAAAAGCCAAATGAGTCTATAACAATGTAACACATTTGTATCAAATTCTTAACTAAACTGacaatttgagaaaaaaaagtttaggttcaGCAGTACGTATAGGTACATTTTTTCACTTCAACTGAAATTAATTGGCTGTGCTGTAAGGACAATGAATGAAAGACAAAATGGGATATGGTAATACGGATAAGGATAAGATCGGAATCATTAATAGGAATTAAGGTACCTACTTTACTTACAAATCTTGCATTGTTACTTTGTTCTTCCCCGTTCTACTGTGCTAAGCAGTTAAATAAgtgcacaattatttttaagcTGGAAAGTAAGTACTTACGTATTTATCACTGGagaaattgaacacattttggctctctttttttaagtgtcttATCAATATTCTCTTGTAACAGTGGAAGGGTTCTTTGCTTATGTTGTTAATGTGGTGGGCAGCCATACCTTAGTGATGTTCAAGTGTAGttggagaaaaacaatgtgatattGAAGACTGTGGGGACTGCACACTGTTTGGACACAGAAGCGGTCTCTGTATTCTGATATTAGTGTTTTATGGAGGCTCTGTGACTCCTCTCTTCTGACACAGATGGTGAGGGAGGGTAAGAGTCCCACTGGAAACCCCGACCAGGGGCCGTGGCAGTGTAGGGCCCGTGCTCCAGGTGTCTGTCTCGATGTTATACACGTGGACACTGCTGAGGAAGCCCTCCTCTGTCCAGGAGAAGCCCCCAATGATATAGATGTAGGAACCCCGGGCAGCACACCCATGTTGGCTGTGACCCACAGGAAGAGGGCTGAGCTCCGTCCACTGGTTCGAGATGGGGCAGTAACGCTCTGTCACGAGGACGTCAGAGTAGGAGCGCCTCTGGGCCTGGGTTCTGCTGATCAGGACGCCACCCATGACGTAGATGTTGTCCTCTATGCAGATCATGCTGTGGAAGCCCCTGGCATACCGCAGAGGGGGCAGGGTTGTCCACTCGTCCAGCTCTTGACAATACCCGTACACTGAGTCAGAGAAGACCTCCCCCGAGGAGCCCCCGCAGACATACAGCTTATTGCCGTGCACCGCGCCGGCGTGGCTGGACAGTGGGCAGGGCAAGGCTCGGATATGGGTCCACTCATCATCAGCAGGGCTGTAACACTCTGCAGAGCACAGGATGCCACCTTCCCCTCTTCCTCCGACAGCATAGATACGACCCCCCATGGCACTGCAGTGGAAACGACGACGACGAACATTCATGTCTGCAAGGCGAGTCCACTTGTCAAAGCGAGGGTCATATCGCCGCACTGAAGCGGTGGCCTCTTCTTCGTGGCTGCTGTTGAACCAGGAATTTTGTCCCcCTATGATATATAGGTAGTCATTGAGCACTACAGCACAATGATTATACATCCCCTCCACACGAGTAACCGTTTTCCATGAACCCGGTTTCAGGTGCTCACCCCCACTCAATACCTGTATCTCCCTGCACTCTTGGCTGCCTGTGGTTTTACCACAAGTTGCCAGCACCCCTTTTCGCGATGACCTTATTTTGAACCACTTCTGATATGGACTGTCAATCTGAAACCGAAGATCTTCTTTAGACATCATCTGAATGTACGTGTCACCCTTTGGGACAGCCTTCACCAGCTCCACAGAGTCTCTGAAGTCATCCTCGGACAAGCACTCTGGAGGGAAGATCAGACCCAAGCGGACTTCTTTCATCAGGTCTTCCAGGTAGGGCAGCCTGTTGTCCAGGTCGTAATTTAACCATTTCAGCGACAGCTCCAGGATGGCTCTCTCGCTGACCTGCGGACTGACGTCATCTCTCTCCAAAACACCCAAAACGGCGTCCCCGTCCACCTGCAACAGAGAGGTCTGGGCCGTTTCCAAAATCACATCTAGGTTTTGTGAAATGAACGAGAAACACTGCAATTTTAAAGAGACCAGGTCGTATTTATCGGACAGGCACAGGATGTCGCTGAAATTGTCCACCCTCAGGGACTGCTGCAGCAGCTCGGCGCAGCACTGCGTGAGATGCGGGATCTGCAGGTGGGTGGAGGTGAGCAGCACGTCCTCCAGGCTCTCAAAGTCTGCGCTCAGGTGGGACGTGTAAATAAAATCCAAGGCACATTTCAGACCCGCTGCAGAGACCCCTTTTAGCTCTACCGAGTCCATGTGTTTCTCCCTCATGTCCGTTGTAAacattattctgaaataataacTTGCTGCGGCTAGGACCGACCTGTGCGCCGAAAAGGTCTCATTTCCAGCAGACAGACGAATGTCGCAAAGGCACTGGGCCTGCCACAGCTCCTGGAAACCGCGCTGCAGAGCCGAGGGGAAGTCGCGGCTGCACAGAGGGAACTGCCCCGGC
>TU88472
tctttgtcagtgggcaaacgcacaaaatcagcaggggatcaaatacttttttctctcaatgTAGTTCATAATATAATGCAGCAGCTGCTCAATACACCACACAAAACGCAGGGTGACCATTTAcatcaggggtgtcagactccagtATCTCCCTGCACTCTTGGCTGCCTGTGGTTTTACCACAAGTTGCCAGCACCCCTTTTCGCGATGACCTTATTTTGAACCACTTCTGATATGGACTGTCAATCTGAAACCGAAGATCTTCTTTAGACATCATCTGAATGTACGTGTCACCCTTTGGGACAGCCTTCACCAGCTCCACAGAGTCTCTGAAGTCATCCTCGGACAAGCACTCTGGAGGGAAGATCAGACCCAAGCGGACTTCTTTCATCAGGTCTTCCAGGTAGGGCAGCCTGTTGTCCAGGTCGTAATTTAACCATTTCAGCGACAGCTCCAGGATGGCTCTCTCGCTGACCTGCGGACTGACGTCATCTCTCTCCAAAACACCCAAAACGGCGTCCCCGTCCACCTGCAACAGAGAGGTCTGGGCCGTTTCCAAAATCACATCTAGGTTTTGTGAAATGAACGAGAAACACTGCAATTTTAAAGAGACCAGGTCGTATTTATCGGACAGGCACAGGATGTCGCTGAAATTGTCCACCCTCAGGGACTGCTGCAGCAGCTCGGCGCAGCACTGCGTGAGATGCGGGATCTGCAGGTGGGTGGAGGTGAGCAGCACGTCCTCCAGGCTCTCAAAGTCTGCGCTCAGGTGGGACGTGTAAATAAAATCCAAGGCACATTTCAGACCCGCTGCAGAGACCCCTTTTAGCTCTACCGAGTCCATGTGTTTCTCCCTCATGTCCGTTGTAAacattattctgaaataataacTTGCTGCGGCTAGGACCGACCTGTGCGCCGAAAAGGTCTCATTTCCAGCAGACAGACGAATGTCGCAAAGGCACTGGGCCTGCCACAGCTCCTGGAAACCGCGCTGCAGAGCCGAGGGGAAGTCGCGGCTGCACAGAGGGAACTGCCCCGGCCCCCCGTGAGAAGCCATGTTGGCTGGCTGTTGTGAAAACGAGGAGCGGGGGATCTTGGGACTCGGGATTCCTTCGCAATGCCTTCTGGGATTTGTAGTTTTAGTCAGTTCTGCACGTCTGTATTTTAGGTTGTTGCTTACCC

Function

symbol description
wdr3 Predicted to enable snoRNA binding activity. Predicted to be involved in maturation of SSU-rRNA. Predicted to be part of Pwp2p-containing subcomplex of 90S preribosome and small-subunit processome. Is expressed in several structures, including alar plate midbrain region; digestive system; immature eye; midbrain; and retina. Human ortholog(s) of this gene implicated in thyroid gland papillary carcinoma. Orthologous to human WDR3 (WD repeat domain 3).

NR:

description
PREDICTED: WD repeat-containing protein 3-like

GO: NA

KEGG:

id description
K14556 DIP2, UTP12, WDR3; U3 small nucleolar RNA-associated protein 12

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014539 True 5892 mRNA 0.49 32 16722215 16737877
TU88472 False 1185 lncRNA 0.52 2 16722073 16723550

Neighbor

gene id symbol gene type direction distance location
AMCG00014534 hao2,LOC102793069 coding downstream 210022 16507387 ~ 16512051 (-)
AMCG00014532 NA coding downstream 217997 16497287 ~ 16504076 (-)
AMCG00014533 NA coding downstream 225492 16479887 ~ 16496581 (-)
AMCG00014529 NA coding downstream 264705 16451881 ~ 16457368 (-)
AMCG00014526 NA coding downstream 275105 16439295 ~ 16446968 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding upstream 45200 16783077 ~ 16785522 (-)
AMCG00014541 man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087 coding upstream 62164 16800041 ~ 16814919 (-)
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding upstream 88768 16826645 ~ 16955741 (-)
AMCG00014542 NA coding upstream 228915 16966792 ~ 16973783 (-)
AMCG00014543 NA coding upstream 238533 16976410 ~ 16977779 (-)
G70731 NA non-coding downstream 252845 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 352609 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 440174 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 507946 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1018759 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 546442 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 611559 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1265933 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1591320 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1926387 18664264 ~ 18664631 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3588322 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5054536 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5584987 11125029 ~ 11137086 (-)
G69537 NA other downstream 5923926 10796716 ~ 10798147 (-)
AMCG00014339 dph3,LOC105022091,LOC106574460 other downstream 6660843 10058097 ~ 10061230 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 708991 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 851390 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1252774 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2463926 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2479845 19217722 ~ 19225230 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_10089124_10102162 WDR3 coding CI01000009 null 10087937 ~ 10102162 (-)