AMCG00014541 (man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087)


Basic Information

Item Value
gene id AMCG00014541
gene name man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16800041 ~ 16814919 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014541
ATGGCAGCAGGGCTCACGTTTCCCAGATCTGTGCAGGCCTTTGACAGCTGCAGAAACCACACATCAGTGGGGGGACTAGGCGACAGCTTCTATGAGTACCTATTAAAAGCCTGGCTGATGTCGGATAAAACTGACAATGAAGCGAGGATGATGTATGATGATGCCATTGAGGCTATCGAGAGACACTTGATCCGGAAATCCAACGGCGGGCTGACCTTTATCGGGGAATGGAAGAACGGCCACCTGGAGAGGAAGATGGGCCACCTGACGTGTTTCGCTGGCGGCATGTTTGCTCTTGGGGCAGATGGGTCGCCTCTGGACAAAGCCGGCCACTACCTCCAGCTCGGAGCGGAGATTGCACACACCTGCCATGAATCCTACGACAGGACAGTGTTAAAGGTTGGCCCAGAGGCATTCAAATTTGACAGCGGGTTGGAGGCCGTTGCAGTCCGACAGAATGAGAAGTACTACATCCTGCGTCCTGAGGTGATCGAGACCTACTGGTACATGTGGAGATATACCCATGACCCGAAGTACCGGCAGTGGGGCTGGGAGGCAGCGCAGgcCATTGACAAGTACTGCAGGGTCAGCGGTGGTTTCTCCGGAGTCAAAGATGTCTACTCCTCAAACCCGGCATATGACGATGTTCAACAAAGCTTCTTCCTCGCTGAAACTTTGAAGTATCTGTACCTCCTGTTCTCCAGTGACGACCTGTTACCTTTAGATAACTGGGTCTTCAACACCGAGGCCCATCCCTTGCCTGTACTGCACCTGGGAAATATAACCCTAGCAGGCAACAATGCTTTTCGATAG

Function

symbol description
man1a2 Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum. Orthologous to human MAN1A2 (mannosidase alpha class 1A member 2).

NR:

description
PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase IB-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014541 True 813 mRNA 0.53 6 16800041 16814919

Neighbor

gene id symbol gene type direction distance location
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding downstream 14519 16783077 ~ 16785522 (-)
AMCG00014534 hao2,LOC102793069 coding downstream 287990 16507387 ~ 16512051 (-)
AMCG00014532 NA coding downstream 295965 16497287 ~ 16504076 (-)
AMCG00014533 NA coding downstream 303460 16479887 ~ 16496581 (-)
AMCG00014529 NA coding downstream 342673 16451881 ~ 16457368 (-)
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding upstream 11726 16826645 ~ 16955741 (-)
AMCG00014542 NA coding upstream 151873 16966792 ~ 16973783 (-)
AMCG00014543 NA coding upstream 161491 16976410 ~ 16977779 (-)
AMCG00014545 NA coding upstream 176250 16991169 ~ 17002661 (-)
AMCG00014546 NA coding upstream 217611 17032530 ~ 17035481 (-)
G70731 NA non-coding downstream 330813 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 430577 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 518142 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 585914 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1096727 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 469400 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 534517 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1188891 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1514278 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1849345 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 62164 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3666290 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5132504 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5662955 11125029 ~ 11137086 (-)
G69537 NA other downstream 6001894 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 631949 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 774348 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1175732 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2386884 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2402803 19217722 ~ 19225230 (-)

Expression


Co-expression Network