AMCG00014542


Basic Information

Item Value
gene id AMCG00014542
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16966792 ~ 16973783 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014542
GAACGACACAAAGTTTCAGGAAAGTTTTGGTGGAGGAGTAGAAGTAAAGACTAATCCGGTGAGCTGGTGAAATATGACAAAGTATGGATACCAGACAATCCACTGCACCTTTAGAGCAAATGTCTGAAATGCACGGAATTCAGTcatctttgctttcgattgtttagATCCTTTGAGGGCATAACACGATcgttttgaatgtctttgatTGGGCGACGCTTGTGCATTTAGATCCCAGGCTCACAATAGTAGGTTGCTACAAGGTTGTGGgcacgttgtgtgttagctgggtttaTTGTGTCCCTTCAGCATGTCAGTGGATGAGGAGAGGAGGCTGGGTGGCTGTGACTCGGGCAGCCCCTTCCCATTATCCAGTAGCAGGAACTCCACAGCAAATGGTCATCCTCGGCTTGGCGACTCCAGGACGGTGTGCTTCGTGTGCAAACGCTTTTACTGCGACCCAAAGATCTTGCCCTGCCTGCACACTTTCTGCTCCGAGTGCATCCGCCAGCTGGAGCCGTTCTCCGCGTCGGCACCGGGCGGGCCGGGTTCTGCGCCCCGGGCACCCAGCATCCGGGAACCGGCCTCGATCACGGTACTGTGCCCGGTGTGCGACTCGGAGGTGGACTTGCCACACGCCGGGGTGGAGGGCTTGACTACAGACCACCTGGCCGTGAGCGACGTTTTGCTGGAAAGTCTGCGGAATGACGAGTGCGAGCTGCTGTGCGATCTGTGCAGCGAGGGGGAGGCCGAGAGACGCTGCGCTGTGTGCAGTGCCAACCTGTGCCAGTTCTGCTGCCAAGCGCACAGGAGACAGAAGAAGACGTCTTCTCACTCCATGGTGTGTCTCCAGGACCTGAAGACCTGCGGGCGTGTGGTGAAGCCTGTGTTGTGCCGGCTGCACCCCAGTGAGGAGCTGAGGCTGTTCTGCGAGACGTGCGACCAGCCTGTGTGCCGCGAATGCGCAGTAACAGGCCATCGGGACCATCTGTGTGATTACACCACCAATGTCATCCACAAGCACGGGGACTATATCAGAGAGTTGGCAAAGAATGTCCAGCCCCATGTGGGCAAGCTGGAGGCCGCCCTGAACAACATCGAGTGCGCCCAGCACACCGTGCAGGCCCGCGCACAGGCCGTGGCCGAGGAGATCCAGACTTTCATGCAGGGGTACATGCGAGCTGTGCAGACGCACTGCCACGGCCTCCTCCGGCAGCTGGAGGAGATCCGTGTCCAGAAGAAGAACCAGCTTCACCTGCAGATGGTCCAGCTGGAGCAGGTCCTGTCCGACGTCAAGACCGGGGTGGACTTCACAGAGCGGCTGCTCACCGACGGCTCGGACGTGGAGATCCTGACAGCCAAGGGTGTGACGGTAAGACGTCTGAAGAGGCTGGGGGAGGTGGGGTACAACGTCCACCCCGTCACCGACGATGGTATCAGCTTCCTCCCCCAGGAGAAGGCCGGGCAGACTGAGGGGTACCAAGTGTTTGGCATGATCTATGCAAGGGCTGTCGATCCAAATAAGTGTGTCATTCAAGGCGAAGCACTTCAGGTGGGCCGCCAGGACAACCCCAGTGAGTTCACCGTGATCTGTAAAGATTCTGCTGGGGAGCAGATGAACAAAGGAGGGGAGACTGTCCGGGTCAGCATTGTCCACAAAACCAAGAAAGACTGTTCCACAAAGCCTACAGTGGTGGATAATAACGATGGTTCATATAGCGTGTCTTACACACCTGTGGAGCCGGGGGCACATACTGTATGGGTGTGTGTTAAAGGACAGCATGTCAAGGGCTCTCCCTTCATGGTGGCTGTGAAGAGCAAGGTCCGTCGGCACCGCGGTACATTTCACTGTTGCACGTTCTGCTCAAGCGTGGGACTGAAGGAAGCGCGCTGTGGCTGCGGGGGGACAATGCCAGGTGGGTACCAGGGCTGTGGCCACGGACACAAAGGGCATCCTGGGAAGCCCCACTGGTCCTGCTGTGGAAATGTGAGTGAAGTGTCTGAGTGTACTGGCTGCAGCGCCGGACCAGTCTCCCCGCGCGGCATCTTCAGGACTGTGGCTCTCTGAGGGAACGGGGCCTGTTTTGGACTATGCATCTTGTCACCCTCATGAGTTTGCCTTTGCACTTGCATGCCTTCAGGTTCTGCAGGCAGAGTTCCACAGAGTACATATGACCACCCTTGTGTAAAtagagaataataaaaacagacatgaTCCAAATTTAATCTGTGTTAATCTTGTTGAAAGAAGAGGCATGCTACTTCTTAGGCAAGGCAGTGTTATACTAGACATACGTTTACACCTATGAGTTTATGTGCCAGGATCCTGGTTATTTATCAAGATCTATTGAGTCTTTACTTGCtaccatttaatttttttaaagcctaGGTATTTCTTCTATATCAATCTAGTAAAGTTTTCAGTTGTtcagattttacatttaaagtgtaTTCTTGATAAAAAGATCTATGCATAATACCTGAATTTacacaaacataatatttatCTTCTAAAAAACACTATCTAGTTTAATACACTAgaattatttgttaatttgaacCTGCTTTCTGCCACATCATTTGGATATGCAAACACAAAGATGAATTCATGCATTAGTGTATGACTTCACAGGTCTGTATTTAGGGGTATTTTTAGTTTCACAGCATATTGTTTTCCATAATACTTatcacaatgttgtttttttgtgctttagTATATAATGAATGAACACATAAGTACactacatttatattgtatatctTTAAAACTGTTAAGTGACCTAAGTGATTTCAgg

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K12021 TRIM45; tripartite motif-containing protein 45

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014542 True 2795 mRNA 0.51 6 16966792 16973783

Neighbor

gene id symbol gene type direction distance location
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding downstream 11051 16826645 ~ 16955741 (-)
AMCG00014541 man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087 coding downstream 151873 16800041 ~ 16814919 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding downstream 181270 16783077 ~ 16785522 (-)
AMCG00014534 hao2,LOC102793069 coding downstream 454741 16507387 ~ 16512051 (-)
AMCG00014532 NA coding downstream 462716 16497287 ~ 16504076 (-)
AMCG00014543 NA coding upstream 2627 16976410 ~ 16977779 (-)
AMCG00014545 NA coding upstream 17386 16991169 ~ 17002661 (-)
AMCG00014546 NA coding upstream 58747 17032530 ~ 17035481 (-)
AMCG00014547 NA coding upstream 91886 17065669 ~ 17086786 (-)
AMCG00014548 LOC105904639 coding upstream 146421 17120204 ~ 17126776 (-)
G70731 NA non-coding downstream 497564 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 597328 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 684893 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 752665 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1263478 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 310536 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 375653 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1030027 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1355414 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1690481 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 228915 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3833041 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5299255 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5829706 11125029 ~ 11137086 (-)
G69537 NA other downstream 6168645 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 473085 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 615484 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1016868 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2228020 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2243939 19217722 ~ 19225230 (-)

Expression


Co-expression Network