AMCG00014544 (man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846)


Basic Information

Item Value
gene id AMCG00014544
gene name man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 16826645 ~ 16955741 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014544
CCCCGCTCTCTCCGCGCCTCTGACTTGAGAGATACTCCCTAACTTCCCCCGCCCGGTTGTCGATGGGATGCTGGAGGACTGAGAGGAGGAGCAGCTGCAGTAACAACATCTCTGATGGAGGGATGCCGTTTTAATGAAatcaggaggaaaaaaagatcGCCGTGCCTGCCTAGTAGTAATCTAGACTTGGAAATACATGACATGCAGCCGGTTGCACCGGTTCCAGGCATGAACCTCCCCGGAACAAGCATCGGCAGCTCTGACCCAGCACCCCGGAGTCGGGCGATGTGCGGGCTGTGATCGGAAAAGAAAGCGCTCCGTCAGCCCCGGCGCCTCAGCGATGACTGGGGGGAGAAAAGCGCAGCAActgtaacaaaaaaagaaatgcaaggaCTGTTTTAACAGAGATCGGTCTGGCGCCGCAGCTGTGTTCAAATCTCCAGTTTGCCGTCAGTGCATTGAACGCAGCGGGGTCTCCTATCGCTGCTGCTGAGATCAGGCCTGGATGAGAAGCAGGAGTTGTTGAGAGATTCACCGCAAGGCATGATTTATTTCATCATAATGTAACGGGACATTTTCCCCGGCTCCCGATGATCGTCCACTGTCCTGTGCGAGACATGCCCAAGCCAGTGTTGCATTTCCTGCAAACCGTCCAAGATGTGACCGTCTTCTGATGTTTTAGGatggttttttgtttgttttgttaagacTACTTTGGGGGCGATAGCGCTTGATTTTTAAACAGTACTGATGTGGTATGATTATTGATCTGTTGAGTTTTAACTCTTGCTCCGGACGACCACTGAGCATGGATGGGAAGGACAATATGATTTGCACGAATATACCCTCGTCAATCAGCTGAAGAGGAAACGTGTCGTCgcttaagataaataaatgcaacttGTTTGAACATCTGCCTGCCGAAATGAGATAGCCTAATACATACGGTATAAAGGAAACCCTATAAACTGTAGTTATAGCACCAATAATAAAAACCAACATGACCACCCCAGCTTTGTTGCCCCTCTCTGGAAGAAGGATACCCACCTTATCTCCCGGCACTGCATCATTCCCTCACCACAGGGCCACCTTGCGCCTCTCTGAGAAGTTCATCCTGCTCCTCATCCTCAGTGCCTTCATCACTCTGTGCTTTGGAGCTTTCTTCTTCCTCCCAGACTCTTCCAAGCACAAGCGCTTCGACCTGGGGTTGGAAGACGTCCTAATACCCCACATTGACTCCAGCAAGGAGGGGAAGCATCCTGGAGGGCAGATCATCCACGGTCAAGGAGGGCATGATGAGCATCGCCACAGGAGGGCCACAGGAGAGCTGTTCAAAGAGCAGGCAACTGcgagggaggaagaggagagctTGAGGAGCAAGATCCGTGCCGATCATGAGCGGGTGCTGGAGGAGGCCAAGGAGAAGCTCATGAAGTCCCGGGAGGAGTTGAGGGCCGAGATCCAGACCGAGAAGAACAAGGTGGCTCAGGATCTCAAGAAGAAGGACAGCAAGCAGCTGCCCCCCGTGCCCATGCCCAAGCTGGTGGGCATCCGTGACGGTGATCCGGGAGACCCCGACGTCAAGGAGAAACGCAACAAGATCCGAGAGATGATGAAGCATGCTTGGGACAGCTATAGACAGTACGGGTGGGGGCACAATGAACTCAAACCACTTTCCAAGAAAGGACATTCCACCAATATCTTCGGAAATTCCCAAATGGGAGCAACCATCGTTGATGCTGTAGACACTCTCTACATCATGGGCCTTCATGACGAATTCAAAGATGGACAGGAATGGATTCAGCAGAATCTGGATTTTAGTGTGAATGCTGAAGTGTCTGTCTTTGAAGTGAATATCCGTTTTATTGGTGGACTGCTGGCAGCCTATTACTTGTCTGGAGAGGAGgtcttcaaaatcaaagcCGTCCAGCTGGCGGAGAAGCTGCTGCCAGCGTTTAACACCCCGACTGGCATCCCTTGGGCAATGGTCAACCTGAAGAGTGGCGTGGGTCGAAACTGGGGCTGGGCGTCTGCAGGCAGCAGCATCCTGGCCGAGTTTGGCACTCTGCATTTGGAGTTCGTCCACCTCACCTACCTGACTGGAGACCCTGTCTACTACAACAAAGTTATGCATATTCGAAAGCTGCTGCAGAAAATGGACAGGCCAAACGGGCTTTATCCGAACTACCTGAACCCAAGAACAGGACGCTGGGGACAACGTGCAGAGGCTGATGGGATTGTGTGA

Function

symbol description
man1a2 Predicted to enable mannosyl-oligosaccharide 1,2-alpha-mannosidase activity. Predicted to be involved in N-glycan processing. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi membrane and endoplasmic reticulum. Orthologous to human MAN1A2 (mannosidase alpha class 1A member 2).

NR:

description
PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase IB-like

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity molecular_function

KEGG:

id description
K01230 MAN1A_C, MNS1_2; mannosyl-oligosaccharide alpha-1,2-mannosidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014544 True 2245 mRNA 0.52 11 16826645 16955741

Neighbor

gene id symbol gene type direction distance location
AMCG00014541 man1a2,LOC107668846,LOC107658234,LOC107724469,LOC107597367,LOC106582087 coding downstream 11726 16800041 ~ 16814919 (-)
AMCG00014540 fam46c,LOC107658236,LOC107597368,LOC107724489,LOC107668849,LOC107569365 coding downstream 41123 16783077 ~ 16785522 (-)
AMCG00014534 hao2,LOC102793069 coding downstream 314594 16507387 ~ 16512051 (-)
AMCG00014532 NA coding downstream 322569 16497287 ~ 16504076 (-)
AMCG00014533 NA coding downstream 330064 16479887 ~ 16496581 (-)
AMCG00014542 NA coding upstream 11051 16966792 ~ 16973783 (-)
AMCG00014543 NA coding upstream 20669 16976410 ~ 16977779 (-)
AMCG00014545 NA coding upstream 35428 16991169 ~ 17002661 (-)
AMCG00014546 NA coding upstream 76789 17032530 ~ 17035481 (-)
AMCG00014547 NA coding upstream 109928 17065669 ~ 17086786 (-)
G70731 NA non-coding downstream 357417 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 457181 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 544746 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 612518 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1123331 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 328578 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 393695 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 1048069 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1373456 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1708523 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 88768 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3692894 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5159108 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5689559 11125029 ~ 11137086 (-)
G69537 NA other downstream 6028498 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 491127 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 633526 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 1034910 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2246062 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2261981 19217722 ~ 19225230 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_10149267_10242850 MGC130950, MAN1A2.L, MAN1A2 coding CI01000009 null 10149267 ~ 10242850 (-)
rainbow trout (Oncorhynchus mykiss) G321944 NA non-coding NC_048568.1 CM023222.3 13195662 ~ 13195910 (-)
mexican tetra (Astyanax mexicanus) G266414 man1a2,LOC102790137 unknown NW_019171935.1 APWO02001533.1 71680 ~ 75889 (+)