AMCG00014547


Basic Information

Item Value
gene id AMCG00014547
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17065669 ~ 17086786 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014547
ATGGCTTTAGTGTTTCCCACAAAGAGCGTCATCCCAGACACTCTGAGTGTGGTGTCCACGGCACAGACGCTCAACAAGGTGGAAGGAGACCCCATACAGTTAACATGCGAAGTGTCCAAACAGACCCTTCAACACAGCCACATCTCCGTGTCCTGGTTCCTGCGCTCGCCGGACCAGACTAGCACCCAAGACCTCATCAACCTCTCCAGGGACTTTGTGCTGCGCCCAGGGGGGCCCTACAAACAGCGCTTTTCCTCTGGGGATTTGAGGCTTGACAAGACCAGCAGCACAGCCTACAAGCTGACAATATACAAACTGCAGCCTGCTGACCAGGGGGAGATCTACTGTGAGGCAGCCGAGTGGATTCAGGACCCTGACAGAACCTGGTTTGCCATGACTAGAAAGCAGTCAGAGAAAACCACAGTCGACGTGCAGCCCACAGATAAGGATTTCAGCATTCAGCTCAACACAGAGAGACGTGGCTATACAGCTGGGGAGGCGCTGGAGCTTCGGTGCAACATCGATGCTCAGAATGTCCCGGAACGGTTCTTCTCCGTGTCGTGGGTGTTCAGCAGCACCCCGGTGGCTGTGATTGGGCCCAACGCTGTCCCAGTGCTCAGCGGGGACTACATCAAGCGCGAAGCTGCCGGCCAGATGATCGTGCGCAAAGAGAGCGATTCTGTGTACCTTCTGAAGATCCAGCGGCTGCGGCAGGAGGACAGTGGGAAGTTCATCTGCAGGGtaacagagagggagaaaacaaCCACTGGCGAATTCATTGACAAGAACAAGAGGTCAAGGAATGTCCAGATCTCTGTGCAGTCCTTGAAAAGCAACatcactgtctctgtgtccagCAACTCCACCAGTGTGATAGAAGGCGATGGCATTCATTTCACCTGCTCTGTGCGCTCTGCCGCGGACAAGGCGGGCAGTCTGTCCTTCTCCTGGCAGTGGACAGATGGAGAAGGCACCTCTTTGGAAATCGCGACTGTTGACCTAGACGGCACAGTCCGGCCCGGCCCGTCGTACCGTGAGCGCAGCAGCTACGGTGAAATCCGTGTGGAGAGGGTACGAGCCGACACCTTCACCCTCTCCGTGTACAACAGCCTTCCCAAGGACGAGGGGCAGTACAAGTGTAACGTGGCTGAGTGGATCCAGGGAACCGATTACTCTTGGAATAAGATTGGAGAAAAGTCGGCTGTGAAACTTGTAACTGTCACTGCCGTTGAATCTGTGTTCTCCATCGCAGCTTCCTCAAGAACACCTAGCGTGACCTACAATGACTCCTTTGACCTGCAGTGCATTGTGAAGCCCCGTTACAACCCCCGTGTGCCAGTCTCCGTGACCTGGCGCTTCCAGCCCACCAACACCACCGAGTTCCGCGACCTGGTCACTTTTACCCGAGACGGCACCTTGCAGTGGGGCGAGCAGTTCTCCAGCTTTGGGACAAGGACCACCATCGACAAGTCTACCTCCAACAGCAACTTCCGACTCAGTGTCAGCCGAGCTAGCAGGCAGGAGTCCGGGACCTACCAGTGCACAGCCGAGCTGTGGAGGAAGAACTACGACGACACCTCCACCAAAGTGACCAACAGGACCTCCAACCTGCTGGGCATCAGCGTGCTAAAGCCA

Function

GO: NA

KEGG:

id description
K06522 IGSF2_3, CD101; immunoglobulin superfamily, member 2/3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014547 True 1635 mRNA 0.56 5 17065669 17086786

Neighbor

gene id symbol gene type direction distance location
AMCG00014546 NA coding downstream 30188 17032530 ~ 17035481 (-)
AMCG00014545 NA coding downstream 63008 16991169 ~ 17002661 (-)
AMCG00014543 NA coding downstream 87890 16976410 ~ 16977779 (-)
AMCG00014542 NA coding downstream 91886 16966792 ~ 16973783 (-)
AMCG00014544 man1a2,LOC107658234,LOC107712247,LOC107724469,LOC107668846 coding downstream 109928 16826645 ~ 16955741 (-)
AMCG00014548 LOC105904639 coding upstream 33418 17120204 ~ 17126776 (-)
AMCG00014550 NA coding upstream 84044 17170830 ~ 17241074 (-)
AMCG00014549 NA coding upstream 163504 17250290 ~ 17279447 (-)
AMCG00014551 NA coding upstream 227400 17314186 ~ 17323621 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding upstream 331671 17418457 ~ 17432186 (-)
G70731 NA non-coding downstream 596441 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 696205 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 783770 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 851542 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1362355 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 197533 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 262650 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 917024 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1242411 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1577478 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 327792 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 3931918 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5398132 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 5928583 11125029 ~ 11137086 (-)
G69537 NA other downstream 6267522 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 360082 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 502481 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 903865 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 2115017 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 2130936 19217722 ~ 19225230 (-)

Expression


Co-expression Network