AMCG00014549


Basic Information

Item Value
gene id AMCG00014549
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17250290 ~ 17279447 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014549
GTCCGTCCCAGACGCCAGGACGCGCTGGTTCTCAAGGGCTGTCAAGTGAAAACGCgtgtaaatacttttttttgatACACCTTTTGATCTTATTTCTGCTCTCAGTAAGTTTTCGTTTTCGTGAGGTGAAGTTGGCAGTAGCATAAATCCAAGCAAAGCCCTAAGGGATCCTGTCTGCGGGGCTGCTGGCCGGTGACAAAGGAAAtccagaaggaaaaaaaaaaatgacgcTTTTTACCAACACGGACCACATCGTCCGATTTGTGTTATTGTCGTTAACGTGTGcaCTAACCCTGGGAAGGATAGTAACAGTTCCTGAAGGCCCTTTGATTCGAGTAGAGGGACAGGATATCTCAATTCCCTGTGAAGTCAATGACTACGAGGGCCCCAGAGAGCAAGACTTTGAATGGAAAGTGATGAAGGGAGGAAATGAAGTTCAGATTATTTCAACTTTTGATTCTTCGTACAGTGACAGTTCCTACGCTGCCCGAGTGAGAAATAAAGATATTACAGTAGATCGAACTGGTGACAACACGGTTGTTCTTAAGATTAAAAGAGTGACGTCAGATGACAGTGCGTTTTACAGCTGCATTACTACCAGCACCGATTCTTCAGTCAAAGGAAACTACGATGCAAGCATACAAGTATTAGTGATTCCAGAAAGCCTGAAAATAATATCTCCCCAAACTTCAAAGACCGTACCTGAAGGCAGTTCCTTTAAGCTGCTTTGCACAGCCACCATTGATTTTGTAGAGCACACTTACCTATCAGTCAGCTGGGCAATCAAAAGGGGCTCCTCTTCTCAAACGATCCTCACTTTCGGTCCAGATGAAAGCATGAAGAGTGAAAGCAGCTACAGTGAGCGATACGCGGATGGCAGCGTGCGTCTGGACCTAGCAGGGAAAGGGCAGTTTGACCTGATAGTCTCTCAGGCTTTGCCCTCTGATGAAGGAGTATACATGTGTTCTGCCAGTGAATGGGTAAAAGAACGGGGTGGTAACTGGGAAAAAATCTTTGGAAACAGCACTGAGGTTGGTGAGGTGAAAGTGACTCCAACAGCGCAATCTTTCATGGTCACCGTGGCACCCAATGCCACTTTAAATACGGACGACACCCTCCACTTAACCTGCACTACTGAGACCAATAATTATGATGTTCTTGGAATGGAGGTTTCGTGGTTTGCCAGTGCTACTCCAAGTAGTGTGCCAGGCAGCGCCCGGTTACTTGTACACATGAGCCGTGATGCAGTGGTGAATGGCTCAGACCTCCTCAGTGTGAGCCGTATTAGTCCAAACGCCTTCAAGCTTGACATCCACAATGTGGACAGCTCAGACTCTGGATATTATTTTTGCCAGGTGGTAGCTTGGATGCAGCAGTCCCCTGGGAAATGGTATAAAGTTGCTGAGAAGACATCAAATGCTGTTAATGTGATAGTGACTTCCCTAGAGCCCTCCTACGATGTAACCCTCCAAGCGGTTCAAACCCCTAGCTTTTCAGATCAGCCGACAGAGCTGGAGTGTAAACTTATAGATGTGAAAAATGCCAAAGGTGTCCGAATGACTGTTGCCTGGAATTACAGGAAAATCACACTTGGAGATATGCCAGTAGTCATTGAAATGATTGCCTCAATGAATGAAAACTGGGATCTGCAAACtggagaaaaatacaaagaccGCGTGGATAAAGGTCACATAGTTCTAAGCAAGGTTAAGCCGGACAGTTTTAAACTGCAGATCCTGCACACACGAGACACAGATAGAGGAGACTATTTCTGCACTGTAACGGCATGGACCCAATCGAGGGATGGCAGCTGGAAGAAGAGTAAGGATGTAAACTCCAGTAATGTCCGAATAAACTGGACTCAACAAAGTCCGAAAAtcgctgttgttgctgtgcccATGAAAATTGCCTTTTCTGGCGGGGACACCTTTGAAATGAGCTGCAACGTGACTGGTGAGAATTTGCAGAGCCCTCTTTACTCTACACTCATAAAGGTGGAGGAGTCCGTGGGGGGGAAAGTCCGGAAGATCATCTCTCTAAGTCGGGACTCGGTTTTGCAATTGGAAGAATGGAATGACAAGGATCGTTTGGACAGTGTGGTCCTGGAGAAAACCAGCCAACACGAGTATCGCTTCAGGATGTATGGAACCCAGATCTCGGACACCGGATTCTATTTCTGCGAGGTCACTGCCTGGACACCAGATGCTGGGAACACCTGGTCACCTGCAACCACTAAAAGTTCTAACAAAGTGAAAGTTGCCTTTGATGATGCAGgTCCAGTTTTCAATGTCTCCATTCACTCGGACACCTTATCAGTTTTCCCTGAAGAAACCACCAAAATTGACTGTGTCATCTCTGCTGTTGGGGCAGCCTCTAACAAAGGcaagtATGACTTCTCCTACGAGGTTGCATGGTTTCTTGACCAGACTCGGTACAAGGAAGGCAGTGTGCACAACATGGCCTTGGTGGACCGTTGGGGTGTGGTGAAGAAGCCCCATCCAAATGGCAGCAGCGACTGCAGCCTGGAGAGGATTGATGAAAAGAAGTATCGCCTTAGCATTCACAAGACTCAGAACAGCGACTATGGGGATTACTATTGCACTGTTACTCCCTGGGTGAAATCCTCCGATGGATCCTGGCAGAAGTCAAAGGACATCACCTCAGAGAATGTCTTCCTGGTTGTGAAGTTTGCAATGTGGGAATCGATGAAGTTGCCGCTGCTGTATGGAGCTGGTGCCGCAGTTGCTGTTGGCCTCCTGTCAGTGCTGATTGGCTTCATCAGTGCCCGCTGCTGCTGTAAGCAAGATGTTGAGGACGACCCCAGGTCCAAACGCCGTCTGATGTCCATGGAAATGGATTGAAAAGAGGGGGCTGGATGGAAATGGAATTGTCTACCAATTGTCTATTTTGGCTACCTTCTGATGAATGTGATGAGATTCAAGCTTTGCGTGCTCAGACACTGCTGGCAAGAAGCCATTTAGAGCTAAAGAACTCAAGCCAATAGAATTAAGTCAATCGGTCATCAgggattgatttttttttttttttttttcctctctctctctatgtgtgtgtgtacgctATTTAAGGCAACAGTCAAAGGAGTAGTGTCTTCTCCATATCCTTTAACTGTTGCCTTAAAACAGGATTAAAGAAAGAATTTatgttcattaaataaaatatatgtaaccCAACCACTCTTAGAATGTCTGAACGAGGGAATTTCTGTCACTGACAATTGCACTGAACTCAGGAAGGTTCCACTGGCAAATATATACCTCTTAAAAAGAGATGACTTTTATAATACTATTCAAATCCAATATGTTTGAAAGCTTTAACTGGGGGCActgcatttttaagtttttaagacCATGGTCAGAGGAAGCTGCTCGGATCTCTCGGAGGCTGTGAAGAGAAGAGTTTTGTATACGTACTCTACCCAGTACTgttattaaagtaatttcataATCTAGTCCACCACCTGGGGAAGAAATTCATGAAGAGATCTATGAATGGCATTCTGCCAGTGTTAACGTTGTCTGGCACAGACGTGCAGAATGGTAAGGGAGCAGAGGGAAAGAATGTCACATTGCCCTGGCTACAGCCTCATTTCACTTGGCATGCACTGTTTGACTATATTCACAAAGAGGGCAATAACCTTCATAGATGTTCTCATCTTTAAACTGATCTCCTTCAAGattgaattttatattttgacagaatgatacttttattttgtaagagaTGCTGATTCCGATCAGCAGTGGTCTGCCTTAAGAATGACCATTTGGAAATTTCACTGTAGTTTAAGTCTCGACATTTTTGTGTCTGCCTACTGCAAAGTGTGTTCATATGAAGATACGTTATTGAGTGTAAGGCCATTGAAGTTACTTCTAatagtttaatataattatcTCAAAGCATTAATAAGTgtattccattattattattattttaacaaagtgtTCTCCGTACAGAATAGTGCAGCGGTTAgtggtttgttttggttatgTGCTTCTTATGTGGGTTGGAGGTGACATTGACCAGTATCATATTGGCCAcactttgcaaaaataaatgtttcttaacAGCTGTTGGGTCAAATATTAGATGAGTCTAGAAGGAACCATCCGGGCGTCAGATGCATCAGAATTTACAACTGCATATTGCACTCGGGAAGGCTGTGGTGgtacaactgaaaatgtaaacatggAAAGGCATTCCAAGAAATACTTAAGGGAAAACACTCATCGATCTATGTTTTGAATCAATGGAGATATACGATGTACTGCTCAAATATGAATACACAGTGAAAAGCCAAAGgttcattattatgttttttaaggaTTACAGTCAAACCTTtgtaagatgtttttattttattttggtgtgttTCGTATGTAAAGATACTAAGATTTTTAGTTTTGCACAAAGGAATGTTTGTCAAGATACTGTATTTCATATATTATCCAGGGAATTATCAGATTTCTAACGATCACagagttttaatgttttttttgtttcgtttatTTCTCTTCtaacacacattaaaatggTATTATAATAAATTTTTTACATGTTCAA

Function

GO: NA

KEGG:

id description
K06729 PTGFRN, CD315; prostaglandin F2 receptor negative regulator

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014549 True 4584 mRNA 0.43 9 17250290 17279447

Neighbor

gene id symbol gene type direction distance location
AMCG00014550 NA coding downstream 9216 17170830 ~ 17241074 (-)
AMCG00014548 LOC105904639 coding downstream 123514 17120204 ~ 17126776 (-)
AMCG00014547 NA coding downstream 163504 17065669 ~ 17086786 (-)
AMCG00014546 NA coding downstream 214809 17032530 ~ 17035481 (-)
AMCG00014545 NA coding downstream 247629 16991169 ~ 17002661 (-)
AMCG00014551 NA coding upstream 34739 17314186 ~ 17323621 (-)
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding upstream 139010 17418457 ~ 17432186 (-)
AMCG00014556 LOC107569141 coding upstream 205403 17484850 ~ 17500956 (-)
AMCG00014557 NA coding upstream 276220 17555667 ~ 17566646 (-)
AMCG00014558 NA coding upstream 293456 17572903 ~ 17582074 (-)
G70731 NA non-coding downstream 781062 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 880826 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 968391 16281685 ~ 16281899 (-)
G70660 NA non-coding downstream 1036163 16212544 ~ 16214127 (-)
G70491 pdcl3,LOC106586481,LOC102788355,LOC106582251 non-coding downstream 1546976 15700208 ~ 15703314 (-)
G70876 NA non-coding upstream 4872 17284319 ~ 17284576 (-)
G70898 NA non-coding upstream 69989 17349436 ~ 17350972 (-)
G70954 NA non-coding upstream 724363 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 1049750 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1384817 18664264 ~ 18664631 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 512413 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4116539 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5582753 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6113204 11125029 ~ 11137086 (-)
G69537 NA other downstream 6452143 10796716 ~ 10798147 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other upstream 167421 17446868 ~ 17462290 (-)
AMCG00014559 NA other upstream 309820 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 711204 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1922356 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1938275 19217722 ~ 19225230 (-)

Expression


Co-expression Network