AMCG00014555 (LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309)


Basic Information

Item Value
gene id AMCG00014555
gene name LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 17446868 ~ 17462290 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014555
TTTTTACTGTTGCAGCAAGGACGAGACAAGTATGAGTTGGCTGCGACATCGGAGCAggggaagaaggaaaagaaggcAAAGAATGAAAGAGATATGGATGAACTGAAGAAGGATGTTGATTTCGATGATCACAAGCTCACATTGACTGAAATTAATCGCAAGTATGGAACTGATCTCAGCCAGgGCTTAACTTCTATCCGTGCTGCTGAGATCTTATTACGAGATGGCCCCAATGCTCTCACTCCTCCAGCCACTACTCCAGAATGGATTAAGTTTTGCAAGCAATTGTTTGGTGGTTTTTCAATACTGCTCTGGACTGGAGCCATTCTCTGTTTCTTGGCTTATGGAATTCAGTCTGCCACAGAGGATGAACCTGTAAATGATAATTTATATTTGGGTATTGTACTTACTGCTGTCGTCATCATCACTGCCTGTTTCTCATACTACCAAGAAGCTAAGAGCTGCAGGATCATGGACTCCTTCAAGAACATGGTCCCTCAGcAAGCCCTGGTTATCCGAGATGGTGGGAAGAAAAGCATCAATGTAGCGGAGGTTGTGGTTGGAGACCTGGTTGAAGTACTGGGAGGAGACCGAATACCTGCTGATTTGAGAATCATCTCTGCTCAGAGCTGCAAGGTTGACAATTCTTCCCTCACTGGTGAGTCAGAGCCTCAGACCAGATCACCTGAATTCTCCAACGAAAACCCTCTTGAGACCAggaatattgcttttttttctacCAACTGTGTTGAAGGCACCGCTCGTGGCATTGTCATCAACACTGGTGACAGGACTGTAATGGGACGAATTGCTACTCTTGTATCTGGTCTGGAGGTTGGGCAAACTCCTATCTCCATTGAAATTGAGCACTTCATCCACATCATCACTGGCGTGGCCGTCTTCTTGGGAGTTACCTTCTTAATACTGTCACTGATTCTTGGCTATACCTGGCTGGAGGCTGTCATCTTCCTCATTGGAATCATTGTGGCCAATGTGCCCGAGGGTCTCCTGGCTACCGTCACTGTGTGTCTGACTCTCACAGCAAAGCGTATGGCCCGAAAGAACTGCCTTGTGAAGAATCTGGAAGCTGTGGAGACTCTGGGGTCCACCTCCACCATTTGCTCTGACAAGACTGGAACCCTGACTCAGAACAGAATGACTGTGGCCCATATGTGGTTTGATAAACAGATTCATGATGCAGATACCACTGAAAACCAGAGCGgAACATCCTTTGATAAAAGTTCACTAACCTGGGCTGCTCTTGCCCGTGTATCTGGCTTATGTAATCGCGCTGTGTTTCTGTCTTCACAAGACAATGTGCCAATTCTTAAGAGAGATGTTGCTGGTGATGCCTCGGAGTCTGCCTTGCTGAAGTGTATTGAACTGTGCTGTGGATCTGTAGAAGAGATGAGGGAGCAATACCCTAAAGTTGCAGAAATCCCATTCAACTCATCTAACAAGTACCAGGGCAAGGAACAGACTTTGGATGATGAGATGAAGGATGCTTTTCATAATGCCTACCTTGACCTTGGTGGCCTAGGAGAGAGAGTGCTTGGTTTCTGCCAATGTATTCTCCCTGACAGGCAGTTCACAGAAGGATTTCAGTTTGAAGTAGAGGAGGTGAACTTCCCAACTGAGAATCTCTGTTTTGTTGGCATGATGTCTCTGATTGACCCACCTCGTGCAGCTGTGCCTGATGCTGTCAGCAAGTGCAGGAGTGCTGGAATAAAGGTTATCATGGTCACTGGTGACCACCCAATTACAGCCAAGGCTATTGCAAAGGGTGTGGGGATCATCTCTGAGGGCAATGAAACTGTTGAAGACATTGCAGCCCGTCTGAACATCCCGATTAGCAAAGTCAACCCCAGAGATGCCAAGGCCTGTGTAGTTCATGGCAGTGACCTGAAGGATATGAGCCCAGAACAGCTGGCTGAAATCCTGAAACACCACACTGAGATTGTGTTTGCCAGAACTTCTCCCCAACAGAAGCTAATGATCGTGGAGGGCTGTCAGAATCAGggtGCTATTGTAGCTGTGACTGGTGATGGTGTGAATGACTCTCCTGCCCTGAAGAAAGCCGATATTGGTGTTGCCATGGGTATTGCGGGCTCAGATGTGTCCAAACAGGCTGCTGACATGATCCTTATGGATGACAACTTTGCTTCCATTAAGTCCATTGCCTACACCCTGACTAGTAAAATTCCTGAGATGTCACCCTTCCTGTTTTTTGTCCTTGCCAGCATCCCTCTGCCCCTGGGAACAGTCACCATCCTTTGTATTGACTTGGGTACTGACATGGTTCCAGCTATCTCCCTGGCTTATGAACAAGCAGAGAGCGACATCATGAAGAGACAGCCCAGAAATCCCAAAACAGACAAACTGGTGAATGAGAGGCTGATCAGTATGGCTTATGGTCAAATCGGTATGATCCAGGCCGTGGGAGCATTTTTCACCTATTTTGTCATTCTGGCGGAGTATGGTTTTCTGCCATCAAGACTACCTGGTATCCGTGTTGACTGggataataaatgtgtaaatgatgTTGAGGACAGCTATGGACAGCAGTGGaCCTATGAACAGAGAAAGATTGTTGAGTTTACCTGCCACACAGCCTTCTTTACCAGCATTGTGATTGTGCAGTGGACTGACTTGATCATCTGTAAGACGAGGACCAACTCACTCTTCCAGCAGGGAATGAAGAACAAAATCCTTATTTTTGGGTTGATTGAAGAAACTGGTCTGGCTGTCTTCCTGTCTTACTGCCCTGGAATGGACATTGCCCTAAGAATGTATCCCTTGAAGTAAGTTAAGGCTTAAGTTTGTCCATTGTATTAGATCACAACAATATTTTGTGATGCACAACCTATAACCTTCAAACATTGTGGACTGGACTCGATGTGGAACATTAATGttgtctttatttctttgatGCCCTTACCTATGGTAACTATGTTACATATAAGTTCTTAAAGTGATTCTGCAGATCCAGCACAATACTAAATATTCTAACATgataattgatttgttttttgactGTAAGTTAATAGTACCCTAACATACACAAATTCAGACGATtctgcatatacatacatatatctatGTTGTTCTCATGATATGGGAGTTTTGATAAATTCGTGTCTGTTTTTTGAAACcatgcacatgtttttttttctctctagaCCAAACTGGTGGTTCTGCGCTTTCCCTTACTCCTTCCTAATCTTTCTTTATGATGAAGTCAGGAAATATATCCTC
>TU88625
CGTGGGAGCATTTTTCACCTATTTTGTCATTCTGGCGGAGTATGGTTTTCTGCCATCAAGACTACCTGGTATCCGTGTTGACTGggataataaatgtgtaaatgatgTTGAGGACAGCTATGGACAGCAGTGGaCCTATGAACAGAGAAAGATTGTTGAGTTTACCTGCCACACAGCCTTCTTTACCAGCATTGTGATTGTGCAGTGGACTGACTTGATCATCTGTAAGACGAGGACCAACTCACTCTTCCAGCAGGGAATGAAGAACAAAATCCTTATTTTTGGGTTGATTGAAGAAACTGGTCTGGCTGTCTTCCTGTCTTACTGCCCTGGAATGGACATTGCCCTAAGAATGTATCCCTTGAAaCCAAACTGGTGGTTCTGCGCTTTCCCTTACTCCTTCCTAATCTTTCTTTATGATGAAGTCAGGAAATATATCCTCAGACGCAGCCCAGGAgGTTGGTTAGAGAAGGAGACATACTATTAAACCATCACTGTTCATCACACATTTCTATAGTCTTGCTGGTCTGACTTTTAATCTCCAAAACTTCAGATGTGTTTTATGGAGAACAATTCAAATCAATGGAGACGGTGAACCAAgaaattctgtgtttg

Function

NR:

description
PREDICTED: sodium/potassium-transporting ATPase subunit alpha-1 isoform X1

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0015672 monovalent inorganic cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0019829 ATPase-coupled cation transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function

KEGG:

id description
K01539 ATP1A; sodium/potassium-transporting ATPase subunit alpha

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014555 True 3255 mRNA 0.45 21 17447501 17462290
TU88625 False 615 lncRNA 0.42 5 17446868 17448717

Neighbor

gene id symbol gene type direction distance location
AMCG00014554 LOC108242195,LOC106919873,LOC106525269,LOC106574724 coding downstream 14682 17418457 ~ 17432186 (-)
AMCG00014551 NA coding downstream 123247 17314186 ~ 17323621 (-)
AMCG00014549 NA coding downstream 167421 17250290 ~ 17279447 (-)
AMCG00014550 NA coding downstream 205794 17170830 ~ 17241074 (-)
AMCG00014548 LOC105904639 coding downstream 320092 17120204 ~ 17126776 (-)
AMCG00014556 LOC107569141 coding upstream 22560 17484850 ~ 17500956 (-)
AMCG00014557 NA coding upstream 93377 17555667 ~ 17566646 (-)
AMCG00014558 NA coding upstream 110613 17572903 ~ 17582074 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding upstream 292674 17754964 ~ 17808430 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding upstream 472876 17935166 ~ 17935714 (-)
G70898 NA non-coding downstream 95896 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 162292 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 977640 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1077404 16366124 ~ 16369464 (-)
G70679 NA non-coding downstream 1164969 16281685 ~ 16281899 (-)
G70954 NA non-coding upstream 541520 18003810 ~ 18004023 (-)
G71016 NA non-coding upstream 866907 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 1201974 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 1206511 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 1224208 18686498 ~ 18687346 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 708991 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 4313117 13087608 ~ 13133751 (-)
AMCG00014374 NA other downstream 5779331 11660011 ~ 11667537 (-)
AMCG00014365 ube2al,ube2a,LOC105016494,LOC107552373,LOC103021436,LOC103029486,LOC108259060,LOC105934920 other downstream 6309782 11125029 ~ 11137086 (-)
G69537 NA other downstream 6648721 10796716 ~ 10798147 (-)
AMCG00014559 NA other upstream 126977 17589267 ~ 17621151 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other upstream 528361 17990651 ~ 18022095 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 1739513 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 1755432 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 4763634 22225924 ~ 22244915 (-)

Expression


Co-expression Network