AMCG00014563 (klf5,LOC107757638,LOC102777034)


Basic Information

Item Value
gene id AMCG00014563
gene name klf5,LOC107757638,LOC102777034
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18070534 ~ 18080340 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014563
CAGAGAGCGCGGCGCTTCGAGGCAGGAGGGCGTGTGAAGACAGAGCTCGCCACCATACCTGCGCTCAAGAGAAATAACCCTTCACTCGTAACTCGGACTTACACTGCGGGTTTTGACCCCCTTTTTAGTTGTCGCCGATGGCCACCACCACTCTGCTGCCGATGAACGCGGGGCTGGGTCCGGGGCAGGAGGAGCTCTTCTACACGCTGCTCAGACCGGCGGCGCACGGCGACGGCAGCCCGCACAGAGAGCCCGCCGGGGAGCTGAGGAGCGCCGCCTCGGCCAGGGCTTTGGGCGGCGATTTCGCACAGACGAGATCAGAGATGGATAAGTACCTGACGCCCCAGCCGCCGCCACCCCTGATCGTTCCAGATGCGAAGAAATTCCGCCGTGACAGTGCTTCTGTGGTGGACCAGTTCTTCGACGAGGATGAGGGGTCACCTTACAGTATCAACATGAATGTCTTCCTCCCTGACTTCACATACCTCCGGACCGGCCTGTGCAGACCGCAGAAGTCGCCCATGCCTCAGATCAAGACTGAACCCATGCCCTGTTATGTGCCTCAGAATGGCCCCAGTACTAGTGCAGCACAGGCCCTTCCCGATTTCACCAGCGTCTTCAGctcctcagtggggacggacaTGAACAGCATCTTCATCAAACAAGAGATGCCTTCTCTTGATATCCCCCATGATGGGCCCTTGTTTCAGCTCCTGAATTCTCCAGATCTGGAAGGACCCCTGACTGGAAACCAGACCAGTGCGGACTCTCACGGCAGCGTTCAAATGACGGCCACGATGCCCGCTCTTAATGACCTGCACTTAGCCACCCAACAGACTTCAGTCAAATCATTTTGTCATATGCACAGTGGGGCATATTCCCTGCCCCCCCATTTtgttcataatcatcatcatcatcatcatcatcagcaaccgcagcagcagcaacaacaacaacaacaacaacaacaacaacaacatccaaAACCCACCTATCTCCCACCCTCTCCTCCCAATTCCGAGCCTGGCAGcccagacagacaaacagaactCTTGCAGAATTTGTCGCCCCCTCCCTCTTATGCGGCCAGCATTGCCTCCAAATTGGGAGTCCACAATCCAAACCTCACCCCGGCCTTGCAGGTAGCCCAGCAGTCTATGCCAGTTAGGTATAATCGCAGGACTAACCCCGACTTGGAGAAAAGAAGAATACACCACTGTGACTTTCCAGGGTGCAAGAAAGTCTACACCAAATCTTCTCACCTGAAAGCCCACTTAAGGACTCATACTGGTGAGAAACCCTACAAATGCACCTGGGAGGGATGTGACTGGCGGTTTGCCCGGTCAGATGAGCTGACACGTCACTTCAGGAAGCACACGGGAGCAAAACCCTTCCAGTGTGCCGTATGCAGCCGCAGCTTCTCGCGCTCAGACCACCTGGCTCTGCACATGAAGCGCCACCAGAATTAGCCTGCCACCGACAGCAGCACGAAACCTTGGAGGTTGCTGCCTGAACTATTTTCACAGTAAactttggggggtggggggggacaggAACTTTTTACTTGTATAGATTTAATGCAACATGGCTGAAGAGGAAGTCGGAAGAAtttgtttatcattattattatgattgttacttttctttttaagcttGGATCCATGCATTATTTTTCgaaaaccaaaaatataatgtttcttctcaaataaattaaagagacCTTTATCATTCACATTATGACAAGAAACCAAAGTTTCTACATTTctatcttttagttttttgaccAAAGCATGTTTCAATGAAGAGAAGCTGATGCAGAGATCCGAGACAAAATAatcttttaaatgaagaaaaccaaaaaacacacaaacaaacaaaaaaaaaccttcaggccttatatgaaaatgaatttcaaACCAAAGAACAAAACTTGGAATCTACTTGAAATTTTATGgaatattttactttgaattagacatttttattatgacaaatatttacataatataatattatgtgATAGCACACATATTGTACAGCATATATTTGTAAAGGGCTTgaactacatttatttgtttaccacAACTAGTGTTAGAAGCTTTAAAATCACTGTTAATTCCTGCCTACAAGAGATAAACACCATACTACTGCCGATGTCAGAATCGCCAAAAGGCCTGCTGTGATTTTATggtataacacacacacacacacacacacaggataaTGCAAAACCATTGAAActggtgaaataaaaatgtggcCTTTATTAACAATGGGTATAAATGCCGGATTGATCTCATAAAAAAGACTAATAAGGTTTACAATCCATTGGACACTATTTTTCAGTAACCATACTGGAGAAAATATCAGAGACTTTTTGATATTTAGTTTCAATCGCACTGGAAGAAAAATGTAGGActggagttttattttattacttctaAATTAAAACTTGCATTTCAAACTGGATTTCAGTTTGAGTTTTATCGCCTTAAcaaaaattgaatgtattactactgattttgtttttaaacataaggGAGTGATTAATTAactactaattaattaattttatatagcGTAAAAAAGGGATTACCCAACATGGGATCAAACTGGTTCAAATAGAGGTACCATTTGTACAAGCATTTAGTTGTTTCTACTGATGtgcatgtttcattttcttatttctaaTCTTGTTTGAAGCCAAATGAATGtataaaaccacacaaacaatTGTCTATAAGAAGCTCTAAAAATGAAATTCAGTCAAATGCCTTTCAAGGccctttcagaaaacaaaaaatgtgtttctggtTAAATTAATGATCTTTTAGGCACTTGTGAAAAAGATTGCTTGGTTCATCGGTACATAagttccttttttcatttttatttatttatatagcctggTATACATTGGAAGCAAATAATTTATCATTTGTATGTGAGATGCCTTAATGTAAATACTTGGCATGTGctgtacatattgtttttttgtaacatttgtcaGTTGTTTTTGGAAACAAAGGGGCAGAGGCACTACCCTCCTGCGTCCGCACCGCGTGTTGGTTTCATGTTGTTGTGAGTGttccacttctgtttttatattgttttaaattgatgtgtaaaatgtatgatgAAGTTCTCAAAGCAGTCGcgtgtttattgttttggaaCCGAACAAAAAGCCTAATAAAATGTAGCTGTTGCTTTCCA

Function

symbol description
klf5 Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in cell-cell signaling via exosome and positive regulation of pri-miRNA transcription by RNA polymerase II. Located in Golgi apparatus and nucleoplasm.

NR:

description
PREDICTED: progesterone-induced-blocking factor 1-like

GO: NA

KEGG:

id description
K09206 KLF5; krueppel-like factor 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014563 True 3216 mRNA 0.43 4 18070534 18080340

Neighbor

gene id symbol gene type direction distance location
AMCG00014564 NA coding upstream 3352 18038108 ~ 18067182 (+)
AMCG00014565 NA coding upstream 40638 17949560 ~ 18029896 (+)
AMCG00014560 NA coding upstream 290453 17779565 ~ 17780081 (+)
AMCG00014552 NA coding upstream 737719 17328913 ~ 17332815 (+)
AMCG00014536 gdap2,LOC104943794,LOC104954255 coding upstream 1304982 16737483 ~ 16765552 (+)
AMCG00014569 NA coding downstream 243930 18324270 ~ 18332414 (+)
AMCG00014574 NA coding downstream 294304 18374644 ~ 18395600 (+)
AMCG00014573 NA coding downstream 390211 18470551 ~ 18475184 (+)
AMCG00014575 NA coding downstream 398069 18478409 ~ 18480032 (+)
AMCG00014583 NA coding downstream 506094 18586434 ~ 18609444 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 419532 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 579927 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 719582 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 752978 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 816863 17250319 ~ 17253671 (+)
G71036 kctd12 non-coding downstream 384879 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 396703 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 608208 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 820885 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 967618 19047958 ~ 19048172 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 583484 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 1601325 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 1931502 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2384635 15675631 ~ 15685899 (+)
AMCG00014470 NA other upstream 2828201 15221914 ~ 15242333 (+)
G71004 NA other downstream 191514 18271854 ~ 18274360 (+)
G71525 NA other downstream 4775002 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8824537 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9755163 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9788363 27868703 ~ 27879800 (+)

Expression


Co-expression Network