AMCG00014569


Basic Information

Item Value
gene id AMCG00014569
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18324270 ~ 18332414 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014569
ATGGAGGGCCAACGCTGGTTGCCTTTGGAAGCCAACCCCGATGTTATGAACCAATTTCTCCGACAGTTAGGGTTGCTGCCCACCTGGCAGTTTGGTGATGTGTATGGCATGGATCCCGAGCTCCTCAGTATGGTCCCACGACCTGTCTGTGCAGTCCTGCTTCTCTTCCCAGTTACAGAAAAGtacgAGTCCTATAGACTGCAAGAGGAGGCGAAAATCAAATCACAGGGACAAGAAGTCAGTTCAGAGGTTTATTTCATGAAACAAACAATAGGCAATGCATGCGGGACAATAGGCCTTATTCATGCAGTGGCGAACAACCGAGACAGACTGGAATTTGaccCAGATTCTGCATTGAAAAAGTTTCTGATTGAGTCCAGTTCCTTGAGCCCAGAACAAAAGGCAATTTTCCTGGAGAAGGATGAGATATTCTGtattaatttgcttattttaaatgtgggaACTAGTTTGATGTCCTATAAAACTTATTTTACGGTTGTATTACTTCAGAGCATCCGTGTAACACATGAATCAAGTGCACAGGAAGGACAAACAGAGgCACCAAGTATAGATGAAAAAGTGGACCTGCATTTCAttgcatttgtgaatgttgGGGGACAGTTATATGAACTGGATGGCCGCAAGCCTTTCCCAATTGTTCATGGAAAAACTGCAGAAGATACTTTTCTAGaggatGCTACAGAGGTGTGTAAGAAGTTCATGGCACGCGATCCTGAGGAGCTGAGGTTTACCGTGGTGGCTCTTTCCAAAGTAGCACACCTGGCATGA

Function

GO:

id name namespace
GO:0007219 Notch signaling pathway biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0004843 thiol-dependent ubiquitin-specific protease activity molecular_function

KEGG:

id description
K05609 UCHL3, YUH1; ubiquitin carboxyl-terminal hydrolase L3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014569 True 789 mRNA 0.45 10 18324270 18332414

Neighbor

gene id symbol gene type direction distance location
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 243930 18070534 ~ 18080340 (+)
AMCG00014564 NA coding upstream 257088 18038108 ~ 18067182 (+)
AMCG00014565 NA coding upstream 294374 17949560 ~ 18029896 (+)
AMCG00014560 NA coding upstream 544189 17779565 ~ 17780081 (+)
AMCG00014552 NA coding upstream 991455 17328913 ~ 17332815 (+)
AMCG00014574 NA coding downstream 42230 18374644 ~ 18395600 (+)
AMCG00014573 NA coding downstream 138137 18470551 ~ 18475184 (+)
AMCG00014575 NA coding downstream 145995 18478409 ~ 18480032 (+)
AMCG00014583 NA coding downstream 254020 18586434 ~ 18609444 (+)
AMCG00014580 NA coding downstream 278146 18610560 ~ 18624589 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 673268 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 833663 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 973318 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 1006714 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 1070599 17250319 ~ 17253671 (+)
G71036 kctd12 non-coding downstream 132805 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 144629 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 356134 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 568811 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 715544 19047958 ~ 19048172 (+)
G71004 NA other upstream 49910 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 837220 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 1855061 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2185238 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2638371 15675631 ~ 15685899 (+)
G71525 NA other downstream 4522928 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8572463 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9503089 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9536289 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9969959 28302373 ~ 28304073 (+)

Expression


Co-expression Network