AMCG00014571


Basic Information

Item Value
gene id AMCG00014571
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18263955 ~ 18291505 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014571
CAGGTCCCTGATGTGATCAGCAGTATCCGGCAGGTGTCAAAGACAGCCCTCAAAGAGGGTGCAAAGGCCAagcaggagggggaggaggctTTTTATAACTCTCAGAAATTCGAGGTCCTTTACTGCGGGAAGGTGACGGTCTCCCACAAAAAGGCTCCCTCCACCCTGATAGATGACTGCATTGAGAAGTTTAAACAACATGAGATAGACAGGAAGCGTCTGAAGTTGTTGAACGAACAGCGGGAGTCGACAAACTCCCATGCTGAGTTCACCATAGGGGATGGAGACCCCCTGATTGACCCGCTCAGCAGTGTCCTGGATTCCTCTGAGGGCTGTGGGGCTGCAGAGGCTGGGAATGGGACCAGTGTCCTCTCTGTCAGCACCAGCCAGGCCAGTCTGTATGGCTCGCGTAGTGCCTTCCCAGAGTGCATCTTGGAGGACTCAGGGCTCGATGACCAGCAGGAGTTCCGCACCAGGTGTAACAGCTTGGCTGCAGGGGTGCAGAAGAAGATGATAGACGGCAGCTCAAAGGGTCCAGTCCGCAGGAGGCATGCCAGCGCACCCACCCATGTGCAGCCCTCAGATGCAGAAAAGAACAGGACGATGCTTTTCCAGGTTGGCCGTTTTGAAGTGAACCTTATTAGTCCTGACAGCAAAACAGTGGTGCTTGAAAAgaattttaaagatatttcttCTTGTTCTCAGggaATTAAACAAACTGATCACTTTGGGTTCATCTGCCGTGAAGCCCTTGAATCCGGTCCAAGTCAGTATGTGTGCTACGTGTTCCAGTGTGCAAGTGAGTCTCTGGTTGATGAAGTGATGCTAACTCTAAAACAAGCGTTCAGTActgctgctgctcttcagaATGCAAAGACCCAAGTGAAGTTGTGTGAGGCCTGCCCCATGCACGACTTACACAAACTCTGCGAGAGGATTGAAGgtCTGTATCCACCTAGAGCCAAGCTCAAAATGAAGCCAGGCAGCGATCAAGAGGAGAATGAGCTGGTGATTCTGCATCTGAGGCAGCTGTGTGAAACCAAGCAAAAAAGCCATCTTCACATCGGAGAGACTCCCCAGAACCTGTCCACCAGCGGCCGGTTTAAACTGGACATTCTGAAGAACAAGGCCCGGAAGTCACTCACCAGCTCTCTGGAAAATATATTCTCACGGGGGGCAAACAGAATGCGCGGCCGCCTTGGGAGCATGGACAGCTTTGAGCGCTGTAACAGCCACATGTCAGATAAGGACTGCTCCCCCGGGGActctccccccaccacccccccagccTCCCCGGTGTCCTCGCTGGGGCAAGCCTTCCCCGAGGAAGACCCTGACTCGCCGCAGTTCAGGAGACGTGCTCACACCTTCAGCCACCCGCCATCCAGCAAGAAGAAGATCTCGTTCCCGGACTCCAAGGCTCACAGCACCAGGTCCCCTCTACTGAGGCAGCAGTCCCTTGCCCCCGAGCTGCTGCAGAGCAGCCCCGTCCCGATCTTGAGCCGCACTCGCAGTGTGTCAGAGAGCGACTCCTCCTCCTTCAGCCTCCCCTCCACGTTCTCAGCTCCCACTTTCCTGAAAAACTTTTACCAGGGCTCCAGCCGGCCACTCCCTCTGGCCGACAGTGCAACCCCCAAGAGCAATGGCGAAGGCAGGAAGAGGACCTTCTCCGGGTGCAGCACTGATTCCCTGAACACGGGGGGTCCTCCCCTCACCCCTCGCCGCGTCTCTTGGCGTCAGAAGATCTTCCTCAGGGTCGCCTCGCCCATGAACAAGTCTCCAGCCACCATGCAGCAGAAAGACCGTCTGGATGGGAACGACCTGCTGCCGCTGTCCCCACTGGCCCCTGCTGTGGAAGAAGACCCCCTGGCCACCCTACTACAGCCCGAGGAGCTGCCTGCTGGGGAGAGACCCAAGCGCACTCCAGAAGAGCTCAGAGTGCTAGATGAACTGCATACTCGGAAGATCAAGCTTGATTACCAGGAGGTGGGCCAGTGTCCGAAGGATGTTCTGGCTGCGTGGGACAAGAGGCTGAGCGTCCCGGTCCGAGCCAAGACCAAGTGTGACATGGAGGAGATCCACAGCGCCCTCAGCCAGGGTGTACCAAAGACTCGACGTGGTGAGATCTGGCAGTTTCTGTCGCACCAGTATCGCCTGCGTCACCGGCTGCCCTGCAAGCAGCAGCCACCGGACCTCTCCTACAAAGAGCTCCTGAAGCAGCTCACTACCCAGCAACATGCCATCCTCGTTGACCTGGGACGTACGTTCCCCACTCACCAGTACTTCTCGGCTCAGCTCGGGGCCGGCCAGCTGTCCCTCTTCAATCTGCTGAAAGCGTACTCTCTGCTGGACAAGGAGGTGGGCTACTGCCAGGGCATCAGCTTCGTGGCTGGAGTCCTGCTGCTGCACATGAGCGAGGAGCACGCCTTCGAGATGCTGAAGTTCCTCATGTACGACCTGAGCTTCCGCAAGCAGTACCGGCCGGACATGATCTCCCTTCAGATCCAGATGTACCAGCTGTCCAGACTCCTACATGACTACCACAGGGATCTGTACGATCACCTAGAGGACAACGAGATCAACCCCAGCCTCTATGCTGCTCCCTGGTTTCTCACTCTCTTCGCCTCCCAGTTTCCTTTGGGCTTTGTAGCCAGTGTGTTTGATCTAATATTCCTTCAGGGGACAGATGTGATTTTTAAAGTTGCTCTGTGTCTGCTAAGTAACCATGAGTCTCGTATTATGGAATGTGACACCTTTGAGACCATCGTGGACTTTCTGAAGTGCACCATCCCAAACTTGACTGTAGCCCAGATGGAAAAGACCATTTCTCAGGTGTTTGAGATGGATATTTCCAAGCAGCTCCATGCCTATGAGGTTGAGTACCATGTCCTACAGGACGAGATGCTGGAGGCTTCCCCCCCACCTGATGACAGCGACCGACTGGAGAAACTAGAAAGGGCCAACAACCAGCTTAAGAGACAGAACATGGACCTGCTGGAGAAACTGCAGGCTGCCCGCCTTAAAATCCAGAACCTGGAGCATAACATGGAAAACTTTCTGACCCGGGAGAGTAAAATGAAGCATCTGATTCGTTCACTGGAGCAAGAGAAGGCAACCTACCAAAAGACGATCGAGCGCATGCGGAGCTGTTTGCCACCAGACATGCTGTCTGATGTCGAACTCACAGAAATGAAGTACAACCCGAATGTCAAGGCGAAACCAGGAAACAAAAAGCCATGACACTGAAATGTGGTAATGTGTAATTCAGTATACTGCTGTTACATTGGTATGaattaaatggggaaaaaacaagctCGCTTATAGAGGCCTTAAAAGCTTTGGCCCATGGcattgtaaaagctaagtgtTATGTGCCAGTGTAAGCTTGCAGGTCTCTATAGTGGCTTTATTGATAAACAGGGCTATAGCTGGGTAACCTttgctgtatatatgtatatcgtACAAAATACGGAATAAACAGTTTGCCAAGGAGTAAGGCGTATAGTAAACAAGTATTTTGAAACGCGAAAACCTGATTCTGGAGAAATGCGTTTTCAGTGTTGAAAACTCTGTGGTTGAGGtactttaataatacaattcaaggCGATATTGAATATAAATTTTGTTGAAGTGTAATCATGTCCATAAACTGTATGTAGGGGGGGAAACAGGAGACAATGTTGTGTGTATTGCAAATACTTGAAAATAAGATGAATGTATTTTCCTTCCAAAGAACAGCATGTTTCAGGTCTgtgttgtgaaaacaaattatatacatatatatctatatatatgttgaaTTATATAAACTTGCAACAAGGCTTTGCTGTTGACACTGACTATTAAAGCTGTTCAGCTTTCTATCACAACATAGCTCTTGCAAGAAAGGGATGGTTACTTCTGTAGCTCTGTGTGATAACCAAATATTTACCATTTTCACTCTTTACAGGAAATGCTTAGCCCAAAGTTCAACCTGAATTCAAATCTATAGTCTGTCTGGCAGTTGGTTTCCTGTATGGCAGACTGTGGTGTCAGACTGGCAGATAATTCATATCTACAGTCTAGTGATTCCTTAACCAGTTCTCGTTACACAGAAAAGAGTAATGTGAGTTGGGCACAGTTTGTGTGTTATGCAGTTACACAGCACATATCTGTAGTAGCTGCACTGAAACAATCCGAGTGCTGAATTATATGGATTAAGCATATAAGTGACTTTCCACATTTCTTCCTTTTGAAGATGTCGTCGTTTGATTAAGATACACTAAAAGAGTTTCAGACTTACGAGTCTGtcacttaatatatattttttttatgacagcTATTAGCTTTAATTTTTCCTTTCAATATTGACTGGCATTAAAAAGTCATTTCACACTTCAACGTGGGAAGCTATAAGCAGTGCTTCACTTGATCTTAAGCAGTGAGGTTAAATCCTGGGTGAAATGgaaagttttgtgtttttgtaaagttatttttacTCTGCTTTTTGTTAAGTTGAACATCTTCTTGGTTTATTTCCTCTTTTCAATATGGGTTGCATAAGCTctccttaaaaacacaaacaagaaaaaacaacactccGTTGTCATCCAGATTTGAGAATGATGTGCTAATCTtctctttaatattattaaatcaaagtttTTCACAAAGGGAAAATAGTTTTCTGGTATCTTGttacattttccagttttaatattataaaacaataatgcaaaataccATGTACACTATTAGTGTCTTTTTTCtaaacttcaattaaaataaacaacaacaaaacacagatttgtCTGCTGTTAAGAAGCTGAAGGCTTATGAAATGCTTTACTCATACCCAGTTTAAGGGTAAAATCATGACTATGgcactgacatttttaattaccaTCCACAAGTACCATCAATGGTATAATTctccacaaaatgcattttaaaggcTTCACaacattgacattttattctTGACATTTTTTCATAATCTTAaagttgcttaaaaaaaattgtgtagccttgttattttatttaaataattagaagCTGCAAGACGCATTTGAGTACTTGGCAAAACCACCATTTGCCCTTTCAGATCcgttccagaaaaaaaaatctatttttttttctgacaaagTGCCAAAACCAGCATTGGTTTCATCAGCCAATATTGTGAACGAATGTGTACAATGATTTTACTGAACCTTATGCAATGTAATCCTTTAAAACTTGAAGAAAAGACTATAAAAAACAGTCAAGGATAAACTCATTTGCTTGTTCAATttcactttttgtgttttaagctTTAGTTCTACTGTCAGTCCTGTTTTTGATAAGTTTTCCTGTACATTACTTACAGCCACAATCTACTGTATGTTTGTCTGGTGCAGGTTTTATGATGTTGGGGTTTTCAGGAGTCATGTGGTGATGAAAACATCACCATAACATATATTGTTACACAACtccaataaacaaaacaaaacagatataaATCTGCACAGTTTA

Function

GO: NA

KEGG:

id description
K17902 TBC1D4, AS160; TBC1 domain family member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014571 True 5493 mRNA 0.46 19 18263955 18291505

Neighbor

gene id symbol gene type direction distance location
AMCG00014568 LOC104962236,LOC106536821 coding downstream 84669 18115011 ~ 18179286 (-)
AMCG00014566 NA coding downstream 226386 18029841 ~ 18037569 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding downstream 328241 17935166 ~ 17935714 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding downstream 455525 17754964 ~ 17808430 (-)
AMCG00014558 NA coding downstream 681881 17572903 ~ 17582074 (-)
AMCG00014572 LOC107655530,LOC107720111,LOC107668890 coding upstream 25349 18316854 ~ 18317264 (-)
AMCG00014570 NA coding upstream 26580 18318085 ~ 18323699 (-)
AMCG00014578 kctd12 coding upstream 175905 18467410 ~ 18468282 (-)
AMCG00014577 zgc:162944,LOC108424409,LOC103034916,LOC107705163,LOC107658212,LOC108266838,LOC107597427 coding upstream 184038 18475543 ~ 18477922 (-)
AMCG00014576 fbxl3,fbxl3a,LOC107703114 coding upstream 193756 18485261 ~ 18487280 (-)
G70954 NA non-coding downstream 259932 18003810 ~ 18004023 (-)
G70898 NA non-coding downstream 912983 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 979379 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1794727 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1894491 16366124 ~ 16369464 (-)
G71016 NA non-coding upstream 37692 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 372759 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 377296 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 394993 18686498 ~ 18687346 (-)
G71174 NA non-coding upstream 559219 18850724 ~ 18851111 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 241860 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 642804 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 801665 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1526078 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5130204 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 910298 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 926217 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3934419 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8993915 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 9044190 27335695 ~ 27369527 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location