AMCG00014572 (LOC107655530,LOC107720111,LOC107668890)


Basic Information

Item Value
gene id AMCG00014572
gene name LOC107655530,LOC107720111,LOC107668890
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18316854 ~ 18317264 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014572
ATGGAGGTGACGAGTAATCCGGATGACAGAGTGGCAGAGAGGAGGTTTGCGCTGTGGTACATGGGCTGGTCCTCGCTGGACCGCCGGACCACGCTGCCCATGCTGCCCTGGCTGGTGGCGGAGATCCGCAGGAAGAGCGAGAAGAACGAGGCGGGCTCCGCGCAGGCCAGGGAGGTGCAGCTGCTCCTCACGCCGCCTCTCGTCCGCTGCGTCCccgccagcagcagcagcctgtcGGTGTTCATCTTCGAGCATAAAGCCCAGCATATCTCCCGATTCATCCACAACAGCCACGACCTCACCTATTTCGCCTACCTGATCAGGACCCAGCCCGACCACCCGGAGTCCGAGCTGGCGTGTCATGTTTTCAAGGCGTCAGATCCAAACCAGGTTAGTGGTGAAGTTGGTTGA

Function

NR:

description
PREDICTED: TBC1 domain family member 4-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014572 True 411 mRNA 0.62 1 18316854 18317264

Neighbor

gene id symbol gene type direction distance location
AMCG00014571 NA coding downstream 25349 18263955 ~ 18291505 (-)
AMCG00014568 LOC104962236,LOC106536821 coding downstream 137568 18115011 ~ 18179286 (-)
AMCG00014566 NA coding downstream 279285 18029841 ~ 18037569 (-)
AMCG00014562 dach1,LOC105030421,LOC106586049 coding downstream 381140 17935166 ~ 17935714 (-)
AMCG00014561 dach1,LOC107668899,LOC108426032 coding downstream 508424 17754964 ~ 17808430 (-)
AMCG00014570 NA coding upstream 821 18318085 ~ 18323699 (-)
AMCG00014578 kctd12 coding upstream 150146 18467410 ~ 18468282 (-)
AMCG00014577 zgc:162944,LOC108424409,LOC103034916,LOC107705163,LOC107658212,LOC108266838,LOC107597427 coding upstream 158279 18475543 ~ 18477922 (-)
AMCG00014576 fbxl3,fbxl3a,LOC107703114 coding upstream 167997 18485261 ~ 18487280 (-)
AMCG00014579 mycbp2 coding upstream 172286 18489550 ~ 18557288 (-)
G70954 NA non-coding downstream 312831 18003810 ~ 18004023 (-)
G70898 NA non-coding downstream 965882 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 1032278 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1847626 16465779 ~ 16469228 (-)
G70689 NA non-coding downstream 1947390 16366124 ~ 16369464 (-)
G71016 NA non-coding upstream 11933 18329197 ~ 18331100 (-)
G71133 NA non-coding upstream 347000 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 351537 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 369234 18686498 ~ 18687346 (-)
G71174 NA non-coding upstream 533460 18850724 ~ 18851111 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 294759 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 695703 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 854564 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1578977 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5183103 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 884539 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 900458 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3908660 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8968156 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 9018431 27335695 ~ 27369527 (-)

Expression


Co-expression Network