AMCG00014573


Basic Information

Item Value
gene id AMCG00014573
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18470551 ~ 18475184 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014573
agaacagtcttagagaagttacacactacaggcacttttatgcagaccagacaggagagaaagataactgGCCcgcatgtctgtcccgtgatgagtgcaagttcggtttctgcctgacaactgctcagcaAGACCCATATATAGTTAAACCGGGGGAAATGTATGGCatatgaaatgtttaatataaggggggatTATTGAATATATCAAGCACACTgtctggtgaaaactggttcttatcagactctgttcctctgggtatcagggttacactatggcacagtactgtagcacagtgggacagtgaccttgtttacacagacacacagggaaagaaatgcagttcttcagtaACCCTTTTGTATAATATACAAATGCAGTTGCTGGTGTCTAAAAGCAGTAAACACATACAACAGTATGTTTGAGCTCTCTCTTCATCAGTCAGTTCATCTTAGTTTGTATAGCGACAGAGCGCTTTACAAACGCATtaattaaaccacaaacaatGAATAactaaaaccaaataaaccattaggcaccaATTAACCATCTTGTTAGCAATGTGTGTAGGCTACAGTCTGTCTTTCAAAACATGCAACTTCTGAAACCCCAGGGTATTACTTAAGTGCAGTGATTTGGACATTCCAGTTTGCAGCGGTTTCATTTCCATTATTCAAGAATAAGTCAGACTGAAAGTTTTAACATTGCAATATTTTTCCCGCAAGATTCAACCAGACGGAGCCATAATGGTGGAGTGGTCAGTTTCTGTATTCAACAAGAAATTCAAGCACACTGCAAATTAAAGTACAGTAATCTGTCCATCtctggtgtttgttttatggTCGAGGTCAAAACCAGTTAAAAGTGTATATGTGTGAagcattaaaagacaaaacctCTATAAGTCaaagaaatcaaatacatttgttgatgACAAAAATAAGGGTTTAGCATGGGTTAACATATTTTATAACTGAAAGCATCTCCCTAACAAACTGAcctatattgaaaatgtatgcgTTGCTTTAGTTTGTTTCCTTGAAATACTGATCCAGTCAAATGTACATCATTAGATTATTGGTATACTTGGCATTGTATCAGTGGCTGTAGCACAgacaaacattaataaaatcttCAATTCCTTAAAGCACTACTATCGTGTGGGCAGATTTCTGCGTGTTAAGCATGTAAAGGTATTTCGAAAACCCAGTGATGACATGAGGCATTTTGGTAGCTATAAATAAGGAAGTTTGTGGCAGTACCCTACAGTGGTAAGCCGGAGAAGACATAATGCTTCGAAAGGGTGTTACTGATAGCTTCGGAAGTGCGATCCACAGTCTGAAAGCTGCTCACCTGACTGACACTGTGATTCAGAGAAGTAAGAGGATGATTCTGGATACGCTGGGAGTGGGGCTGCTGGGCTCTACCACCGCAGTCTTCAACAAGGTCCTCCAGTACAGTAAAATGTACAGAGCAACCAAGACCAGCACAGTGTGGGGAAGATCAGACCTCACCCTGCCTCCTCCGTACGCCGCCTTCGTCAATGGAGTCGCGGTCCACTCAATGGACTTTGATGACACCTGGCACCCTGCCACTCACCCCTCTGGCGCCGTCCTCCCTGCGTTGCTGGCTTTAGCAGAGACCCTGAACACAAGGACATCTGGTCTGGAGCTGCTCCTAGCTTTCAATGTGGGTGTTGAAGTTCAAGGAAGGTTAATGCGGTTCTCCAAGGAAGCACACAACATTCCCAAAAGATTCCACCCCCCCGCAGTGGTTGGGATCATGGGCAGTGCAGCTGCATCAGCTAAACTTCTCGGCCTGGAAGTTCCTCAGTGTCGAGAGGCACTTGCTATAGCTGCCTCGTACGCCGGGGCTCCTATGGCCAATGCGGCCACACAGACCAAACCCCTGCACATTGGGAACGCCACACGAAGGGGCTTGGAGGCAGCCTATTTGTCCCTTTTGGGGCTTGAAGGCAACAGGCAGATTCTTGACATGGACTCTGGTTTTGGCGCTTTCTACACAGACTACACTCCAGACAGGCTGCCGAATGTCAGCTCCTACAGGTGGATTCTGGAGGACCAGGATGTGGCTTTCAAGCGATTCCCGGCTCACTTGGGGATGCACTGGGTGGCAGACGCGGCTGCAGCATTGAGGGCCAGATTACTAGCAACCAACCCAAATATGGACTTCAAGCAGATCAAACACATAGTGCTGAGAGTGCCGAACTCCCGGTACATAAACTGCCCTTTCCCTGCCTCGGAGCACGAAGCCAGGCACTCCTTTCAGTTCAACGCTTGCACCGCAATGCTGGATGGAAAGGTGTCGGTCGAATCTTTCAGCAGCTGCGAAATGGACAGAATGGAATTAAAAGAGCTGCTGGCGAAGGCGAAAGTGGAAAACCCACAGGACAACCTGTCCAACTTTGACACAATGTACTGTGAGGTCCAAGTTGAACTGAACAATGGGGAGGCGTTTACAGAGCGCTGCAATACGTTTTACGGCCACTGGAGGAAGCCTCTGAGCCAGGCAGATCTCTGTCAGAAGTTTAGAGACAACGCGTCCCTCGTGCTGCCACTGGACGCAGTGGAGGGTGTTATCAATCTTGTAGATAACTTGGAGCAGCTCACAGATGTTTCTGTGCTGAGCTCATGCCTGCAAATGAATATGCAAACTCAGCTCTGTCAGAAAATGCCTCATTGAGTCACTCTCGGTCAATAACTCATTTGTATTTCCTGCTACATCAACCACAGGGTAAAACAAACGaaagtcaaacaaaacaaaaacactcaagtTCATTTTGTACCCATCTTGTAAACTTGTTTGGATTGTATTCGGTACTATTAAAAATACTAATCAGAATGATTGTCCTGACGTAACAGAATACTTACAATGGCAGTTACTGAACCACACTGGGGTAAAACAAAGGATTTGCTCTGTGCTAATTTTAAATTTGCTTTGGTatcagtgacattttaaatcactataGACCCATTCCTTATTTACATGTAgcttttttccattcatttaagACAAGGAGCACTAAAGAGAAGATATTATTAGATAACTATAGTGTTCTTCACTCTTTCCCATGACTCATGTCTGCTCTAAACAAGACAATGTTATTGATGGTATAAACAAACTCTGTAAAGGGGCGAGGCTTTAGACAATTCAGATTATGATGAATGCAGgtctgtgtaaaataaactaCTACCTCCCGTCCACA

Function

GO: NA

KEGG:

id description
K17724 IRG1; aconitate decarboxylase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014573 True 3226 mRNA 0.44 5 18470551 18475184

Neighbor

gene id symbol gene type direction distance location
AMCG00014574 NA coding upstream 74951 18374644 ~ 18395600 (+)
AMCG00014569 NA coding upstream 138137 18324270 ~ 18332414 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 390211 18070534 ~ 18080340 (+)
AMCG00014564 NA coding upstream 403369 18038108 ~ 18067182 (+)
AMCG00014565 NA coding upstream 440655 17949560 ~ 18029896 (+)
AMCG00014575 NA coding downstream 3225 18478409 ~ 18480032 (+)
AMCG00014583 NA coding downstream 111250 18586434 ~ 18609444 (+)
AMCG00014580 NA coding downstream 135376 18610560 ~ 18624589 (+)
AMCG00014582 wbp4 coding downstream 151375 18626559 ~ 18632690 (+)
AMCG00014586 NA coding downstream 161522 18636706 ~ 18638604 (+)
G71036 kctd12 non-coding upstream 2216 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 819549 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 979944 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1119599 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 1152995 17316253 ~ 17317556 (+)
G71038 NA non-coding downstream 1859 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 213364 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 426041 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 572774 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 743133 19218317 ~ 19222919 (+)
G71004 NA other upstream 196191 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 983501 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2001342 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2331519 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2784652 15675631 ~ 15685899 (+)
G71525 NA other downstream 4380158 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8429693 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9360319 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9393519 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9827189 28302373 ~ 28304073 (+)

Expression


Co-expression Network