AMCG00014574


Basic Information

Item Value
gene id AMCG00014574
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18374644 ~ 18395600 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014574
ATGTTTGCCCGTAGGACTCGGTCCATCCACAACCCTGTGGACCTCACAAGTTTGACTGCAGAAAGTAGGGAAGACTATAGCTTCACCCCAGAGCCTGAAAGCAACCTAGTTATCCAGCCCAGGCGGGGCGAGTCGGTGACCCCAGATATTAAGAAAGATGACCTGCTTTTCCGTAAAATCCATCTCCGCCCTCAGAGAAAACACCCCCTTTCTGGAGCTCCTGATGTGTACCATGCTGTCCCTGTCCCAGAGCCATGGGCACTGCCACCAAGCCTCAGGTCCAAACTGCTCTGCAACCCCAATCCACCCATTCCTGAAGAAAAGGCTGAAGAGGATGAAGAGAGACCATGTACTCTGCATCCCAAAACAGATGACATGTTGCTTCGCAAGCTGGGGGCGGTGCAGCCCCAGGATTCAGCCCAGTTAATGCCCTCCGTTCCCACTTCCTGCAGTGAGGATGACTTGCAGAAATGGAAAGCGATTCGAGAAGCTAGCCAGCTGAGATACAAGAAGAAGCTAATGGTGGAGAGACTGCGGCAAATGTACCCTGCTGCCGACGGGAGCAAATCTATGAATGATGTAACACAGGAGGCTCCAGTTGCCCGTCAGTTTCGCTTTGAAGAGCTGCAGAAGATCAGGGAGATGGTGAAGGACAGTGATGACAAGTGGCAGGATGATCTTGCCAAGTGGAAAAATCGTCGCAAGAGCTACACTTCTGACCttgtgaaaaagaaagaagaaagggaaCAAATTGAGTTGGTCTCAAACAGTGGAGATACAGGCAGAAAAACAAGGACCTTCCGAGACATGCAGGAGGCGAgGGAGGACCGACTGCAGAGGACTTCTCAACAGAGCAAGCCGGCGTCTGACGGCAGCGACCTTCACTCATCAAATGAAGACGTGTTCACCGAGCAGAAACCCCGCTCCAGGACCCTGCCTCAGAGAAGCTACACTGTGGATGTAGACAATCCTTCCACTGGCTCAAACAGAGTAGCAGCCCCTTTCACCGCTTCTCGGCCAGCTCCGCAAGGCAAAACGGTCACCTCCACAACCAGTGGCACCTTGGTTACATCCTCCACTGTGCGATCCACATCTAAGGACCCAGCGGTTACCTCCTCCATCAAAACCACCACAGTTACCACAGGCAAGACCGATTTGCCAGACCATCCCACCCCTGGCACAACCAGTAAAGCCACTGAATTCAAACGCCCTTTACAGAAGCCATCAGAAGAACAGACCTCTGTTCCTTTGTATAAACACAATTCAATGGATACAAAGCTGGGGGTGGCTCGGGTTTCAGCTTCCCTCCCCAGAAGCTACCAGAGACCTGATACTTCACGGCTAACCTCCGTAGTTACGCCAAGACCTTTCGGGACACAAACAAGCAGACTTTCATCCCTTCCCAGGACTTCTGCTATGGACGATGCACATAACCGTTTTaatggagagacagacagctcTCAGAAGTCCAGCGTGCCCAGTGTCTACAGCAAATTCATGACGCCAGAGGAGGATGCCCGGTCCCAGTCCAGCTCCGTTCTGAGCAGcaatgaagaggaggaggaggaggaggaagaggatgtGAAAGGCCCAGTGCCTGCCTCCTTACCTGCCACAAAACCTGCCCTGGCCCCAGCACCAGCATCTGAGCCAGTGCCAGTGCCTGCCCCGGTACCTGCGTCTGCGCCAGTGCCTGCGCCAGTGCCTGCGCCAGTGCCTGCGCCAGTGCCCCAGAAAAGAGGCAGTCTACTTGACTTGAAGCCTGCTGTTCCCATGAGCTCTGAAACTGCGCTGCCTGCCCTGGTGAGAGCTACATCAAAGCCACCAGAAGCCAGAGTGGCTCCCCAGGAGCAGTACAGCGACATGAGAATCATTCTGAACCAGAAACCGAACAGCGGTCGAGACTTTGGATTCAAAACCAGCTGGGACTCTGCTGGAGCCTATGTTAAGTCCATTGATGCAGGCAGTCCAGCTGAGCTGTGCCAGCTACAGGTCAACGATGAGATCCTCACTGTGAATGGTCATGACGTCTCGGACATGGACTACAGCCAGTGGAAGGAGAGCCTTGACAAAGCACTGCAGAACGGAGCCCTTGAGATGGACATCCGTAGATATGGCAAGAAAAGTTCTCCTGAAAATTACATCAGCACCAGCACAGAAACTGCTTCCCACGAATCCTCAAAGAAGACTGTGAATGCAGATCTCGGCCACCAGCCTGTCCGTGATGTGGGGTCTAAAGGACTGAATGGTGGTTTCCGTGAGGAATCTGTGACCATAAGAAATAAAGAATCTGAACCAATTTCTTTGAAAAACTTAAAAAGGAGATCAGAGTTTTTTGAACAAGgaGGTTCGGAGTCGGCAATATCAGATgaGAAGTACAGACGAGAGCAGGAGAAGCTCAACGAGGAGTGGCGTCGAGCCCAGCAGGAAGCAGAGAAGGAGGGGACCAAGTACTATGAAGAGGAGCGCAAGATCTTAGAcgttaaaaccaaaacaacccCTCGATCCCCAGCCTCGCCTCTACGCCAGCCTGTGCCCCCATGGGAAGACCACCAACACCTGGGAGAGGAGCAAAACAGGCTGGCCGAGGAGCAGGAGGCCGCCAGGCGCCAGGAGGAGGAGGCCCATTGGCTGcggcagcaggagcaggaggctgcggaagaagaggagaggaagaggagacagaagcagcagcagcaggagcagcagcagcgtctggaggaggagaagaggcgGCGGGAGGAAGAGCAgcgggagaaggagaggaagcagagagaggaagagcagcGCCGACTGGAGGAGGTGAAACGCCGGCAAGAGGAGGAGAGACGACGCCAGGAGATGGTTGAGGAACAGCGTAGAGAGCAGGAGAGGATTAGAGAACAGGAGAGGATCAGGCAGCAGCAACCACAGCAGCAGTGGTCTGATGAATCCTATGGGTTCTCTAAAATCGTACCTGAAATTGCCAAGTCAGACAGgaacaAGTCCAAGTCTACTTCAGAGCTCGACGATGTTTACACTACAGATGGCAgggGTGCACAGAGTAGACACTGGGGCATTGCCCAGTGGCTGCTAGATGAGGAATGGAAGCGAAAGAAAAGCGGGAAAGTCCAGAGGATGGTGGCAGTGTCTGAGCTGGAGGCTGAGAGACAGCAGATTGTAAATCTGATGAAATACGCTGACCCCGAGAGAGCCAGCAGCGGTGCCCCGGATGGCTCCTGGAGCAGAGATtcacagaagaagaaggagCAGCAGCTGTCTCTGGCAgagcaggagagacagaggatCATCGAcgagatgaagaagaagaaccAGCTGCTGACTGATAGCAGCTGGATCAGGCAGCGCAGTGCCAGCGTGAACAAGGAGCCCGTCAGCCTGGCCGGGCCGATGAGGAGAGGCGAGTCTCTTGACAACCTCGACTCCCCTCGATCAAGCTCGTGGAAGCAGCCTCCTTGGGCGTCTGGCTCGCCATCCTTCTCTTCCTCTGGTCAGGAGTTAAGCCGCACCACCCCTGCACTGTCCACCTCCAACCGCAGTTACCTTCGCTCACCCTCCTCCACCCTGCCGGCGTCCCTGTCCACTGGCTCTCTGAAGCAGGGCCCCTGGAACCAGCCTTCCTTCTTACAGGCTGCTGAGCACTCATCACACTCCCAGTTGCAGCAGCGCAGCAGTGTATCGATTGCGGCTCGGACCTTGGAGGCTCAGAAGCCGGAGCTGAAGTCAGAATACGAAACCGCCAGCTCTACTGCAACAACTGCTATGTCCGATTTAAAACTGGACAGCCCACTAACATGTGATGTGAGCTTTGGAAAAAACGACCCACTGCAACAGATTGAAGAAGAAATGTctgagaaaattaaatgaatgttgCAATAATGACTACAATTAGACCATGACCTTATATATATTACAtcctctatatatataatatgatatgATTCTGTAGCACATAATTGTATAATTCATTTGTGACCTTTTATTGCAAAGAATAGGCGTCATAGGATGTCTTTATACTAGAATATTGCATTAAGCTTGTACAGATTATATGAGGGATATGCATGTATAGAAGTTTTATTAGATATTATACTTTTGTCTGGTTGATAAATCATTCTGGTGACCTTCAGCTGGTATGAAAGTAGCATTTGTTAATTTGTCCATATTAAAGGTATTTGAAACTTGCTATTGTATTGCCTCCTCTAGAGCTTAGGGTTTTTTCCTCAAGATATTTCCTTGCGAGGTTTGATTGTGTGATGTCTTTCTGGTCACATTATCTAAAATGTgcctttgtgatttattttgtgagggTGAAagatttattatatacacaatGGCTTACATAGAGTATTTAAACTATTGACTTGAATGGGGAGAGTTCTTGTGgacaggctttttgtttttgtttttcattttcattgagatttattaaatttgatttgTGGGAACAAGGATTTTGCTTAGAAAAACAAGTTTATAACTGGAATCTAAGCAAATTATACATTGTTCGGTgatgtttgtaaataaaattaccaaatctgcatcctgtgtgtgtgttttatacaaCTTCAATGGAA

Function

GO: NA

KEGG:

id description
K06084 LMO7, FBXO20; F-box protein 20

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014574 True 4574 mRNA 0.51 21 18374644 18395600

Neighbor

gene id symbol gene type direction distance location
AMCG00014569 NA coding upstream 42230 18324270 ~ 18332414 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 294304 18070534 ~ 18080340 (+)
AMCG00014564 NA coding upstream 307462 18038108 ~ 18067182 (+)
AMCG00014565 NA coding upstream 344748 17949560 ~ 18029896 (+)
AMCG00014560 NA coding upstream 594563 17779565 ~ 17780081 (+)
AMCG00014573 NA coding downstream 74951 18470551 ~ 18475184 (+)
AMCG00014575 NA coding downstream 82809 18478409 ~ 18480032 (+)
AMCG00014583 NA coding downstream 190834 18586434 ~ 18609444 (+)
AMCG00014580 NA coding downstream 214960 18610560 ~ 18624589 (+)
AMCG00014582 wbp4 coding downstream 230959 18626559 ~ 18632690 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 723642 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 884037 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1023692 17349436 ~ 17350952 (+)
G70883 NA non-coding upstream 1057088 17316253 ~ 17317556 (+)
G70865 NA non-coding upstream 1120973 17250319 ~ 17253671 (+)
G71036 kctd12 non-coding downstream 69619 18465219 ~ 18468335 (+)
G71038 NA non-coding downstream 81443 18477043 ~ 18478028 (+)
G71136 NA non-coding downstream 292948 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 505625 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 652358 19047958 ~ 19048172 (+)
G71004 NA other upstream 100284 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 887594 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 1905435 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2235612 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2688745 15675631 ~ 15685899 (+)
G71525 NA other downstream 4459742 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8509277 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9439903 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9473103 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9906773 28302373 ~ 28304073 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09435601_09439347 NA coding CI01000009 null 9435601 ~ 9439361 (+)