AMCG00014575


Basic Information

Item Value
gene id AMCG00014575
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18478409 ~ 18480032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014575
ATGAGAGGCGTGCAGGTGTTGACAtggtgtgtgttgtctgtgcttGCTTTGAGTCCACAATCGTTTGGACTGGATCGTGGAGAAAATCACCAGCAATGGCCGGTACCTTACAGGCGTTTTGATCATCGCCCGAAAGCTGACCCCTTCTGCCAGGCGTTATACCCCTTCTGCCCCACTGGCGCTGCAGACGGCAGTATCCCAGCCATGCACGATTCAGATGTAATTGAGGTTTTTCGGCTACAGGCGCCTGTATGGGAGTTTAAATACGGAGGCTTGCTTGGGATGTTTCACATCATGCACGATGCCATTGGTTTCCGGAGCACCGTGACCGGGCAGAACTACACCATGGAGTGGTACGAGCTCTTCCAGCTGGGCAACTGCACCTTCCCACACCTGAGAGACGAGATCAGAGCGCCCTTCTGGTGCAACCAGGGCGCTGCGTGCTTTTTCCCAGGGATAGACGACCAGCACTGGAAACAGAATGGCACTTTGGAGAAAGTGGCAGAAATGACAGGTACACAGTTCAACAAAATGGCCAAATGGGTAAAGGAGGACAATGAAACGGGTATTTATTACGAAACATGGACAGTGCAATCCGAGCCCAGCCCCGACAGCACCATGTGGTTTGAATCCTATGACTGCTCTCAATTTGTACACCGGACTTACAGAAAACTGGCAGAGATGGGTGTGACTTTTAAAAGCGCTGTCCAAACCAACTACACAAAGCTATTCCTGTACAGTGGACAACCTACTTTTTTAGGAAATGATACCACCATCTTCGGAGACACCAGGAAGAATCCGTTGGCCGCTGAGATAAGGGACTTCTATCATTCTTTCAGACCTCACCAGTCAATCAAAGACTTTCTGCTCAGCCTTCTGGAAATATTTGACAGGGTTGTTTTGGAAAAGAGTTTCTATTTGTACTATAATTATGAATATTGGCATTTACCCATGAAGCCACCTTATATCAGAATTACTTATGAAGAAGTCCCCTTGCCTTAG

Function

GO:

id name namespace
GO:0022008 neurogenesis biological_process
GO:0005764 lysosome cellular_component

KEGG:

id description
K12390 CLN5; ceroid-lipofuscinosis neuronal protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014575 True 1002 mRNA 0.48 4 18478409 18480032

Neighbor

gene id symbol gene type direction distance location
AMCG00014573 NA coding upstream 3225 18470551 ~ 18475184 (+)
AMCG00014574 NA coding upstream 82809 18374644 ~ 18395600 (+)
AMCG00014569 NA coding upstream 145995 18324270 ~ 18332414 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 398069 18070534 ~ 18080340 (+)
AMCG00014564 NA coding upstream 411227 18038108 ~ 18067182 (+)
AMCG00014583 NA coding downstream 106402 18586434 ~ 18609444 (+)
AMCG00014580 NA coding downstream 130528 18610560 ~ 18624589 (+)
AMCG00014582 wbp4 coding downstream 146527 18626559 ~ 18632690 (+)
AMCG00014586 NA coding downstream 156674 18636706 ~ 18638604 (+)
AMCG00014581 NA coding downstream 165828 18645860 ~ 18659061 (+)
G71038 NA non-coding upstream 381 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 10074 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 827407 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 987802 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1127457 17349436 ~ 17350952 (+)
G71136 NA non-coding downstream 208516 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 421193 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 567926 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 738285 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1444870 19924902 ~ 19925198 (+)
G71004 NA other upstream 204049 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 991359 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2009200 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2339377 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2792510 15675631 ~ 15685899 (+)
G71525 NA other downstream 4375310 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8424845 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9355471 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9388671 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9822341 28302373 ~ 28304073 (+)

Expression


Co-expression Network