AMCG00014578 (kctd12)


Basic Information

Item Value
gene id AMCG00014578
gene name kctd12
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18467410 ~ 18468282 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014578
ATGGCTTTGGCAGACGCCTCGGGTGGGCTCTCTAACGGCGGGGACTCCGGCTCCCCTTTCTCGGAGATCATCGAGCTCAATGTGGGGGGGCAGGTGTACGTGACCCGGCACACCACCCTGGTCGCCGTGCCGGACTCGCTGCTGTGGAGCATGTTCAGCCAGAAGAGCCCGCAGGAGCTGGCGAGGGACAGCAAAGGGCGCTACTTTCTGGACAGGGACGGCTTTCTGTTCCGCTACATCCTGGACTACCTGCGGGACCTCAACCTGGTGTTGCCCGACTACTTCCCGGAGAAGTGCCGGCTGCAGAGGGAAGCCCAGTTCTTCCAGCTGCACGACCTGTCCCAGCGCCTGAGCCCCAAGGTGAGCAAGGACAACTCCCTCAGCGAGGAGGTCTGCCCCGGCGACCCGGACGAGGCGGCGGCGTTCGCGGGCTCCGGCGCCGGCTGGGACCCCTCCCGCCAGGCGACGCCAGCGGGCACCGCCAACCCCCGCTCCCCGTCGCTGGAGTCCAAAAAGTCGGGCTACATCACGATCGGATACAGGGGCTCCTACACCATCGGCAGAGACACGCAGACCGATGCCAAGTTCAGGAGGGTGGCCAGGATCACGGTGTGCGGGAAGACCTCTCTGGCCAAGGAGGTGTTTGGAGACACGCTGAACGAGAGCCGGGACCCCGATCGGCCGCCGGAGAGGTACACCTCCAGGTACTACCTGAAATATAACTTCCTGGAGCAGGCGTTTGACCGGCTGACGGAGGCCGGCTTCCACATGGTGGCCTGCAGCTCCACGGGCACCTGCGCCTACGCCAGCAGCGACCCCAACGAGGACAAGATCTGGACCAGCTACACGGAGTACGTTTTCTGCAGAGACTGA

Function

symbol description
kctd12 Enables identical protein binding activity. Predicted to be involved in protein homooligomerization. Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway. Predicted to be located in cell projection. Predicted to be part of receptor complex. Predicted to be active in postsynaptic membrane and presynaptic membrane.

NR:

description
PREDICTED: BTB/POZ domain-containing protein KCTD12

GO:

id name namespace
GO:0048814 regulation of dendrite morphogenesis biological_process
GO:0051260 protein homooligomerization biological_process
GO:0006811 ion transport biological_process
GO:0021986 habenula development biological_process

KEGG:

id description
K21918 KCTD8_12_16; BTB/POZ domain-containing protein KCTD8/12/16

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014578 True 873 mRNA 0.65 1 18467410 18468282

Neighbor

gene id symbol gene type direction distance location
AMCG00014570 NA coding downstream 143711 18318085 ~ 18323699 (-)
AMCG00014572 LOC107655530,LOC107720111,LOC107668890 coding downstream 150146 18316854 ~ 18317264 (-)
AMCG00014571 NA coding downstream 175905 18263955 ~ 18291505 (-)
AMCG00014568 LOC104962236,LOC106536821 coding downstream 288124 18115011 ~ 18179286 (-)
AMCG00014566 NA coding downstream 429841 18029841 ~ 18037569 (-)
AMCG00014577 zgc:162944,LOC108424409,LOC103034916,LOC107705163,LOC107658212,LOC108266838,LOC107597427 coding upstream 7261 18475543 ~ 18477922 (-)
AMCG00014576 fbxl3,fbxl3a,LOC107703114 coding upstream 16979 18485261 ~ 18487280 (-)
AMCG00014579 mycbp2 coding upstream 21268 18489550 ~ 18557288 (-)
AMCG00014585 NA coding upstream 171530 18639812 ~ 18644670 (-)
AMCG00014588 vwa8 coding upstream 227793 18696075 ~ 18709409 (-)
G71016 NA non-coding downstream 136310 18329197 ~ 18331100 (-)
G70954 NA non-coding downstream 463387 18003810 ~ 18004023 (-)
G70898 NA non-coding downstream 1116438 17349436 ~ 17350972 (-)
G70876 NA non-coding downstream 1182834 17284319 ~ 17284576 (-)
G70731 NA non-coding downstream 1998182 16465779 ~ 16469228 (-)
G71133 NA non-coding upstream 195982 18664264 ~ 18664631 (-)
G71157 NA non-coding upstream 200519 18668801 ~ 18669655 (-)
G71160 NA non-coding upstream 218216 18686498 ~ 18687346 (-)
G71174 NA non-coding upstream 382442 18850724 ~ 18851111 (-)
G71179 NA non-coding upstream 406323 18874605 ~ 18878253 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 445315 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 846259 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1005120 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 1729533 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5333659 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 733521 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 749440 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3757642 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8817138 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8867413 27335695 ~ 27369527 (-)

Expression


Co-expression Network