AMCG00014580


Basic Information

Item Value
gene id AMCG00014580
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18610560 ~ 18624589 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014580
GCCACAGTGCGCTGGCAGCGCTGCTCGAGTGGATCCGCTTAATGCACAAATCTCAGTGAAGCCAACGGCACGACCACCATTTTTCACCAGTGATGCATATATATTGATGTGTAGTCCCCCCCTAGTCCATGGAAGCTGCCGTGCTAAAGCCGCAAATGATGGCGGATGTTAACTGCAACAATAACGCTGTAAACGCCGAGCTGGAGGTGAAAAAGCTGCAGGAGCTGGTGCGCAAACTGGAAAAGCAAAACGAGCAGCTCCGGACCAGGGCGAACGCGGTGAGCAGCTGTACTGTCAGCCCGCATATGCTGCAGTCTCCCCCGGCCTGTCTGCTGGGGAGCCCCGGGGGAGCCGGCGGAGTCAGCTCGGTCTTCACGGGGAGTTACTGCATCCCCAGCCCGGTGCCGACGCTCTTGTGTCCGGCCGCTATCGGTCCCTACTGCCCGTCGGACGACCAGTACCTGTATTTCAATGCGCAGTCTGCCGCCGGCGCGGAGTCGCAGGAGGTCTGCAGCCGCAGCTCGGAGCCCACCATCCTGGATGAGGTGGAACTGCTGGACCTAGATTCGGTTTTCTGCAGCGAGGAGAAGGAGGATACCTGGCTGTATGTGTCACCGAAGGCAAAGTTTACTTCTGAAGAGCGACACCTCAGCCCCCTTCAGTGGTGCAGGCAGGTGCTAGATAACCCCCGGCCTGAAATGGAAGCTGCAAAACGCTCTCTCTGCCTAAGACTTGAACAAGGGTTTTCCAGCAGGCACCCTCCCCTGAGTCGGCAGTCTTCCATTGACAGTGAGCTGAGCACGTCTGAACTGGAGGATGACTCAATCTCCATGGGATATAAGCTGCAAGATTTAACTGATGTGCAGATAATGGCACGACTTCAAGAAGAAAGTCTTCGTCAGGACTACGCTTCGACGTCGGCGTCCGTGACCAGGCGCAGCTCCAGCTTTTCCTTCCACTCTGGGCGGAAGGGGGCCGGCAGTGACCTGGACTACGACCAGTACAGCCTGGACGACGAGGAGGATTACGACCACCTGCCGCCCCCCCAGCCCCGCCTCACGCGCTGCACCCCCCTGCACAGAGGCCTCCCCCATTCTCAGACTTTCTCCAGCATCCGAGAGTGCCGCCGGAGCCCCAGCTCGCCGTACTTGAACAGCTTCAGTTACCAGCAGTACTCCACCCCGACGACGCCAGTGTACACCCCTGACTCGCAGCCAAGCTACAGGACCGGCACAGATAAACTGAGGAGAAGCATGCCTAACCTGGCCCGTATGCCCAGCACCACCAGCCACTCCAGCCACACCAGCTCCCCCTCCTCTTTGCAGCATCGTGTCCACAGTGTGGGCAATTTCCCTGTGCCTATTAGGCAGTCTCTGAAAGCCACTGCCTATGTCAGCCCCACTGTTCAGGGCCCTGTGGGGATGCCCACCTCCGTCAGTTTACACTCCATCTCCAGCAGTGGCATCCCTCTGCCTAACAAGCCTGTAACACCCGCATCAGCGGGCCGCAGCGCTCTCCCCAGACCCGCCTCCGTCATCGGGGGCAGCAGCATACCCCGGAGCAAGATAGCACAGCCTGTCCGGAGttTACTCCAGCCTCCGAAGACACTATCAGCACTCAGTACTCTCCGAGATGGCAGCTGGCGTGATGGTTGCTACTGATACAGGGTATATTGGAACCAGGAACTTGAAGATACAACAGTATTAAGTGCCCAGCTGGCTGGGACAGGTTGATGTATCACAAAGTGTTCTTGAAATCAAGAAACATTTGACTGTTGCACAGCAAACTCTGAGGTCTAGTTTTCTTACAAAGGAATCTGAAATGCTTACCTAATTACGGTTCAACTGAGGTACACTCGCTGTATGCATTGCAATAATGCTACTTTTACAGTTTGCAATATtctatcatatttttaaaacaaagcattttagCCAAAAAGACAAAATAGGGCATACTGGTTTAAACTGTTTACAAGATCATGCTTACAACTAATGTTACTAATagttattttgtcattttggaACTTTTTAATAATGAAGACTGAGCAACGAATGTCTGAACATGAGATTTTTTAAGAACtaatacaatatgtattatcTTTGTAATGTGGTGCCTATTGTATAGTGTTTAACTTcctttttatgtgttttgtttgctgttccCTCTGCACTTTGAGTTTTACGTTcactttaaattgtaattttatgttTAAGCATGGATTAAATCCATATAATATCACCTTCCATTTTGAACACATGAGTGTTTCGGAAGTATTTTCACAGATTTAGCAATAGAATGTTtgtcattaattcatttaaatgttaatttatgttCGTCTTCATTCTAcgtatttaatttattggttttCAAGATAGTGTTTTTAAGTGCATTGCAAGTCTTCTGAAATGACTTTCTTTCCCTATTgtcaaataaacactttaatgaTGTTTATTAACTGTTGTATGGGAATGAGcaggttttaaaacaaaaataaaaactttcaagTTACTTTGCtctgtaaatgttattttcaatgacCTTATTTGAAATTGGTAATTCTTGTTGCCAACTGtcggatttgtttttattttcctaagaTGTAATGGCTAAGGGTTAACCCACTAGCAATATAAAACTCCTTTACACCGccttgtgaaatgtttaaattttcAGATTTGTGTACCCACCCAagctttgaatttgaatatccATACAATAAATGCATAACAATTAAGCAGTCTTACAAATGCAATGCTATAGATGTTTATTCTAAATTTGTGGTTCTACATTGCAGTATTAAAAGGAAATGATTAACACAACTGGTCCAAATAcaacaattaaat

Function

GO: NA

KEGG:

id description
K16580 SLAIN1_2; SLAIN motif-containing protein 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014580 True 2843 mRNA 0.47 7 18610560 18624589

Neighbor

gene id symbol gene type direction distance location
AMCG00014583 NA coding upstream 1116 18586434 ~ 18609444 (+)
AMCG00014575 NA coding upstream 130528 18478409 ~ 18480032 (+)
AMCG00014573 NA coding upstream 135376 18470551 ~ 18475184 (+)
AMCG00014574 NA coding upstream 214960 18374644 ~ 18395600 (+)
AMCG00014569 NA coding upstream 278146 18324270 ~ 18332414 (+)
AMCG00014582 wbp4 coding downstream 1970 18626559 ~ 18632690 (+)
AMCG00014586 NA coding downstream 12117 18636706 ~ 18638604 (+)
AMCG00014581 NA coding downstream 21271 18645860 ~ 18659061 (+)
AMCG00014584 NA coding downstream 37619 18662208 ~ 18667126 (+)
AMCG00014587 NA coding downstream 44217 18668806 ~ 18674332 (+)
G71038 NA non-coding upstream 132532 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 142225 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 959558 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 1119953 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1259608 17349436 ~ 17350952 (+)
G71136 NA non-coding downstream 63959 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 276636 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 423369 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 593728 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1300313 19924902 ~ 19925198 (+)
G71004 NA other upstream 336200 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1123510 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2141351 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2471528 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2924661 15675631 ~ 15685899 (+)
G71525 NA other downstream 4230753 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8280288 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9210914 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9244114 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9677784 28302373 ~ 28304073 (+)

Expression


Co-expression Network