AMCG00014582 (wbp4)


Basic Information

Item Value
gene id AMCG00014582
gene name wbp4
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18626559 ~ 18632690 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014582
TCCGTACGTGGGACCTCAGTGCTACACAAAACATGGAGGACTGTGGTTGAGTTGTATAGTGAAACTTAAGTTCCTTTTCGAGTACATGTATATcactgaaaaatacatgtaattagcAATATCTATCGGAAATGGCAGATTACTGGAAGTCACAGCCCAAGAAGTTCTGCCAGTACTGCAAGTGCTGGATAGCAGACAACAAACCTAGTGTTGAATTCCATGAGAGGGGAAAGAACCACAAAGAAAATGTTGCTGCCAAAATTAATGAGATTAAGAAGAAGAGTGTTGACAAAGCGAAGCAGGAGGAACGCATGTCAAAGGAGTTTGAAGCTATGGAGGAAGCAGCTTTAAAAGCGTATCAGGAAGATCTAAAACGACTAGGAGTTGACTCAGAACCACCAAAGGCTGCAGAACCCCAGAGTAAAAAGCCAGTAAAGCGGACTTCAGCTCCAAAACGTGGAGGAGGACGGGACTGGGTGGAAGGAAAATCTTCTGGTTGCCCATGGATTGAAGCTGTTAGCCCAGAGGGCTTTACCTACTACTATAACACAATAACAGGAGaGTCCAGATGGGAGAAGCCCGACGAATTCACACCCGATGCGTCCGGAAGCAGTGAGCCCACAGTGGGCCTGGAGGAGTCTCCCTCCTCTGAATCTCGATCCTCGTCTGTGGCGGACGACCTTCCTGAAAGGGAGGAGGGGACCACACAACCAGAGGCTCCAAAAGAACCACAGAAAGTCAAGATCAGTTTCAGAAGAAAGAGTCCAGCAGAAGAGAAGAGCAAAGTCTTAGAAGAGTGCTATGATGCAGAGGAAGAAGAGATAGAAACTCagaaagaagaggaggaggagaagggggtagagaaagaggaggaggaggaggaggaggaggaggagaaggagaagaattCTTCCCCAGAAATTGAAGAGAGCCAAGTCAGAAAATCCAACAAGCCAACTCCATATGGAGTCTGGGAGAGGATACAACAGGAGGAAGACCCATATGAGCAGGTGGACTTGCAACTTCCCCAAGTGGAAGGTCAGAACACAGCAGCCTCGGCCCCAGAAGTCCCGCCAGAGCctaaaatcaaatttaaagagCGCACCATAACTTCCCTGGGAGACGACACTGGGGAAGGAGTGGCCTTCAAGAAGAGGAAGACGGAGAACGGCAAATCCCGGAACCTGAGGCAGAGGGGGAATGATGATTAGTCTCCTGTCCTTAAGTAACAAACTCTTAACAGGCTTGTAGGATTCCATTGTGATTGGTTGGGGGACACTTTCTGttttaagaaaagaaaggaaaaagctAAGAATAAAAGGACGCCGAATTTCTCCAACTTTAACAGCCCACAGCTGGTCTGCCTGTAAGAGTGTATGGGATTTTCTCCACAATTTACTGCTTTGTACATGTACAGGTGTATTGTAGGTGCTGCTTGTGTTTTGAAGCCATTAGGTTTTCTATCCTTCCGTAattaatgcatttgacaaaaagCAAGACATTATGCAAATAAGTTTCagaataaacattacattttctaaaagtTTATAACCCTCCACCTTTGCACACagtaatatttttgtaatggacTAAGCATAATTAATTTCCTTGACAAGTCACCCTTCTCATTCTATAACTAGGCTTCATATTCTCAACCTCTCCGTGTTTTATCGGGCACCATTTATGACTCTCCTTCCCTTACTGGAGTCAGCATAGTTACATAGCTCAGTTGGTTGTGTTAATCCTCTACAATGTTAAGTTAGGGACAGCTGGTTTGAACTCGGGCCAAGCGGCAGAACAATCAGAGATGAACTCAACAGTTTTGATAATGGGTCCACAGCTGTTTTTTGCCCAAACCACATCAAATCTTAAATGAACTTAAACCTGCTGTGCTACAGAATCTATCAGAGGATTACCTTCAGGAAATGCAACACATTAGAAGACTAAATCAGTGTCATTCTGCGTTGAAGAAGTGACAGAATCTGTGGAACTGGAAAATGATCATGAAATGAGACTAGAGGTTTATTCTTTCATGTACAGACATTATTTTACCGAGATTGAATTTCTGTATCGTTTACATGGAAGTTCAGTGTGCagattttttcaatattattattttcagagctTGTTTTTTACATCACGCAAAACTGCCACCATAGTCCAAGAAATGCATGTCAGACTTTAAGGCTACTGATAAAGGGAATAACGTTTGTGGCGTCGTTCCCAACAGTTTGTACGCAAGTATTTGTCTCCCTGTTCAAACTGTCATGGTGATGATTCTGGGTTTATATTAAAAGAATGCTCCTGAATGTTTTATCAGTGACTTGGTTTCTGTTACAGTCTTTTACAGTGTTGCAAGAGATGGTCTTAATAAATTGATATAATCTAGTATGCATGCCTcgaataaaatgttattttcatggTTGAACTATGTTTGCATTCCAAATATTCCACTCAAGGCAGTCATGTAGAACAGGCTAGATACAAAGGTCCAGAcctctctttcattttcttaatttttaacaGACCAGAACTTTGTTTTAGTTACACCATGGTAACAGTAGGTTTGCATGACGTTCATATAGGCTTTTATGCATCCAGTGCTGCTTTGCTTTCTTAGGTGGCCTTAATCGGTGAGTATTCATGTATATTTCTGTGTATCCTTTTTGGGGGGCTATTTTAGACTTTAACAAGAAAAGTAAAGAACAGCAGTATTCAATAAGATCAGAAAGTATTAGATATATTACTAAAGTATTTGTGACTTTAATGGATAATTATGTTGTTGGTTAATCCAAATTGCTGTATTGGAAGTTAATGGTTTTTGAATGTGTAGGGTTTGTAGCAAATGTACATTTGTCATAGCAGTGTAGATTTTCTAACCACATTGTTCTCCAtgccaaaacaataaaatttgtaaatgtaaa

Function

symbol description
wbp4 Predicted to enable RNA binding activity. Predicted to be involved in RNA splicing. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be located in nucleus. Predicted to be part of precatalytic spliceosome. Orthologous to human WBP4 (WW domain binding protein 4).

NR:

description
PREDICTED: WW domain-binding protein 4

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K13220 WBP4, FBP21; WW domain-binding protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014582 True 2924 mRNA 0.41 9 18626559 18632690

Neighbor

gene id symbol gene type direction distance location
AMCG00014580 NA coding upstream 1970 18610560 ~ 18624589 (+)
AMCG00014583 NA coding upstream 17115 18586434 ~ 18609444 (+)
AMCG00014575 NA coding upstream 146527 18478409 ~ 18480032 (+)
AMCG00014573 NA coding upstream 151375 18470551 ~ 18475184 (+)
AMCG00014574 NA coding upstream 230959 18374644 ~ 18395600 (+)
AMCG00014586 NA coding downstream 4016 18636706 ~ 18638604 (+)
AMCG00014581 NA coding downstream 13170 18645860 ~ 18659061 (+)
AMCG00014584 NA coding downstream 29518 18662208 ~ 18667126 (+)
AMCG00014587 NA coding downstream 36116 18668806 ~ 18674332 (+)
AMCG00014592 NA coding downstream 149367 18782057 ~ 18786527 (+)
G71038 NA non-coding upstream 148531 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 158224 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 975557 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 1135952 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1275607 17349436 ~ 17350952 (+)
G71136 NA non-coding downstream 55858 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 268535 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 415268 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 585627 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1292212 19924902 ~ 19925198 (+)
G71004 NA other upstream 352199 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1139509 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2157350 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2487527 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2940660 15675631 ~ 15685899 (+)
G71525 NA other downstream 4222652 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8272187 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9202813 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9236013 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9669683 28302373 ~ 28304073 (+)

Expression


Co-expression Network