AMCG00014583


Basic Information

Item Value
gene id AMCG00014583
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18586434 ~ 18609444 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014583
TGGAAATCCAGAGACCGTGGTAGATTCACACAGAAGAATGGGCGTCTAGAGAATGAGAAAAGCCACTTTTCTGGTTTCAGGCGCTGCCAGCTATTTTGCCTCAAGACACACCCTCTGTTCCACCTTGTGTCTCCTCCCTGGGAGATACAGATACAGTGAGTAAGAGGGAACGTGAGACAGGTGCATTAAACACAGTGTTTATTGTTCCTCTGGCTCGCACTGCAGTCACTCTCTCAGCCATTTCACAAGCAGCCTGTTTGTTGATTGGACATTCATACGACTTGCACAATGTCTTACGCATAtcccaagaaaacaaacactcctAAAACTGACACCAGAAGCAATGCTCAGATTGTGGAAGATAACAGGAAGAAAACGAACTTGCTGAAAGACAACAGCTGGATCAAAAAGAATGTGGAAGAAGATGAACCCATTGAATTCGGTGTCGGCGGAGACCAGACCTCCCAGATCAAGACTACATTCTCCAATACAGTAAAAAACACTGTGGTTGAGCAAGCTAAGACAAGCACATCAGAGGTTCAGAATCCTAAAAAACCTGTCCAGGCCCAGGTCTCCAAAGAATCAGCCACCAAGGGaGCTACAAGTGTTTCTGCTACTGAAACACCAAAGACTGAGGTGACTAAAAAAGCCAGCATCAAGGAAAGCTCTAACGATGGTGACTATGATTTCATTAAGACTGACTCACTGAAGTCCCCCACCTCTGCTGACTATGATTTCATGAAGTCTGCCTCCCTGAAGTCCCCCACCTCCAGaacaacaacaagcTATAAAACTTACACCAGTACTGAAGACCTGCCGTCTACCATCACCACTAAAGTTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCGAAGGTCTACACCAGTACTGAAGACCTGCCGTCTACCATCACAACTAAGGTGTACAGCAGCTCTGACAACCTGCCTTCTACAAGAACATCGAAGGTCTACACCAGTACTGAAAACCTGCCGTCTACTATCACCACTAAAGTTTACAGCAGCTCTGACAACCTGCCTTCGACAAGAACATCGAAGGTCTACACCAGCACTGAAAACCTGCCATCTACCATCACAACTAAGACTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCGAAGATCTACACCAGTACTGAAGACCTGCCGTCTACCATCACAACTAAGACTTACAGCAGCTCTGAGAACCTGCCTTCTACAAGAACATCAAAAGTCTACACCAGCACTGAGAATCTGCCTTCTACAAGAACATCGAAACTCTACAGCAGTACTGAGGATCTGATTTCTACAAGAAGCTACTCCAGAAATAGTGAACCCAGCTATGACTATACGGATTCATCAAGCAGATCCAAAAGCTACTCCAGCAAGATGAGTGATTCCAGCAATCCACAGGATTACTATGAAGGTTCCATCTCATCCAAATCCATCCACACAGTTTATTCAACTTCAGACAGGACTATAATCGACAAAGACATGTGCACCTACTGCCGTAAACCTATCAACACCGAAGCAAAAATGATCCTGGATGATCTGCACATATGCTGTCATGCTTCTTGCTTCAAGTGCGAGGTCTGCAACAGCCCACTGGGAAACCTTAAAGCTGGAGATAGCATGTGGATTTACAGACGCTCTGTTCATTGCGAGAACTGCTTTGGCATTGCAAGAGataagTGGCATCGTTGAATTCAGAGATCCTGATGGTGTCAAATGTATGCAGATATTATATgtcaaaacatgcattttatatagtCATGAAAAAGCTACAAGGCAAGTTTAtagaaatatatgaaatataaaaattacagaaataGATCATAAACATGTTGAACACATAAACTATGCCATAATATTGCCTTGTAAATCTTTCTTATAGGTTGTGGGTCCATTACTTCCTGTaaccatgcatttaaatatcatCAAATATATGACGTGATTCAAAATATAGGTGGCTTTGTGCAACTATACTTATGTAATAGTATACATTTTAGGGCACTAAGAGTACTAACAGTGACTTTTTACGACCTTTGAACTATGATTAACTAACagtatattaacaaatattagTGGCTTGATTTGACTTGTTTCCTGAACTAGTAACTCAAATtgcattacaataaaacaatacaattataaataaataaaaaatctttcttaac

Function

GO: NA

KEGG:

id description
K24424 SCEL; sciellin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014583 True 2186 mRNA 0.42 15 18586434 18609444

Neighbor

gene id symbol gene type direction distance location
AMCG00014575 NA coding upstream 106402 18478409 ~ 18480032 (+)
AMCG00014573 NA coding upstream 111250 18470551 ~ 18475184 (+)
AMCG00014574 NA coding upstream 190834 18374644 ~ 18395600 (+)
AMCG00014569 NA coding upstream 254020 18324270 ~ 18332414 (+)
AMCG00014563 klf5,LOC107757638,LOC102777034 coding upstream 506094 18070534 ~ 18080340 (+)
AMCG00014580 NA coding downstream 1116 18610560 ~ 18624589 (+)
AMCG00014582 wbp4 coding downstream 17115 18626559 ~ 18632690 (+)
AMCG00014586 NA coding downstream 27262 18636706 ~ 18638604 (+)
AMCG00014581 NA coding downstream 36416 18645860 ~ 18659061 (+)
AMCG00014584 NA coding downstream 52764 18662208 ~ 18667126 (+)
G71038 NA non-coding upstream 108406 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 118099 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 935432 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 1095827 17489826 ~ 17490607 (+)
G70897 NA non-coding upstream 1235482 17349436 ~ 17350952 (+)
G71136 NA non-coding downstream 79104 18688548 ~ 18692633 (+)
G71183 NA non-coding downstream 291781 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 438514 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 608873 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1315458 19924902 ~ 19925198 (+)
G71004 NA other upstream 312074 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1099384 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2117225 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2447402 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 2900535 15675631 ~ 15685899 (+)
G71525 NA other downstream 4245898 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8295433 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 9226059 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 9259259 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9692929 28302373 ~ 28304073 (+)

Expression


Co-expression Network