AMCG00014594


Basic Information

Item Value
gene id AMCG00014594
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 18889772 ~ 18900200 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014594
AGCCGAGCGCTTATGGCAGCTGGTGATGACCGAGGGTACCTGCGGAGCCCCGTAGAGATGGACAGCAGCCAGCGCTTCCAGCCCACCTGCAGACCGCTCCTCTACGGGACTCTGGCTATTATGGGATTGCTTCAGATCGCGTCTAGCGTGGCCATCCTGTTACACCTTACAGGTCACATCGATCAGGTATTGCCCTGTTGTGCCACCAAGAAGGAAATGCCAGCAGAGTTCACCTCACTGGGTCAGAAAGCATATGAGAGCATGCAGACAGGAGGTGTTATTGCAGACGCACTTAAAGATCCCCGAAAAAAGGAACGCTCAAAATGTTGTAAACCTACGAAAGACCAAACTCCTGCAGCTCATCTTACAATAAGGGCTCCAATCAATTTCACCCAAAAAGGAAatattcaacagacactggtaCACTGGAACCCTTCGCATGGCCTTTCACACATACGCCACCTTGGCTACACCGATGGAAAACTCAAAGTGATCGAGGGaggattatattacatatacgCGAAGACTTGTTTCCGTCATTATCCAAGTATATCTGAGGATTCTCTGAAGGATGACACCCAGCTACTGCAGTACATCCATCATGAAAAACAAGCCCAGAAGACAACCATTATTCTGATGAAAAGTGGGAGTACCAAGTCCTGGAATGAGACTGAAGGTTTTTATCTGTATTGTGTTCAGCAAGGTGggattttccttttgaaaagtGGTGATGGGCTTTTTGTAAAAGTATCAAATTCATGGTTACTGGATCCCGAATCAGAGGGGAGTTATTTTGgagcttttaaaataagtaatttaaattgatttgttttctattgaATGTTTGGTGTAAATATTCCTACCTACTGGACATTTTTTATATGATCGAGAACCACTGAGTACTTGCTTGCAAGAATACtgactgtttttttcttatttttaactATGTGTTTCAGTGATATTAATGTTGCTCAAGTATTTACAAATTTGTATAAAATCCTGTTTACTTTTGTACtgtttaaatctatattttatatttcataagtTTCATTAAGTATTATTGCTCATAAACAAAATGACTGACTGTGTCTGCGGAGACACTTTTGTAAGTGTAAGTAAGATTGTAAGGTATTGCTTTGCACTTGTATGTTTTGAGAGCACTTTTGGAACTCCCAATTCAGCATTTTTGTGATAAGTCTTTCTATAAGGAATATTGTTTTCTACttaatttcatataatttatatatttttttaactgtgtaGTTAAAGTGTGGGCCTTTGTGGTACGTTTCTCATTGGTGGGGCCGAGCCGGCTGAAGTCCCATCTCCTGATTGATGGCTTTATATGAAGTTGTCCGTATCCCCCTTAGACAGTGGACTAGAGACACATCTTGGATGCATTTTATGGCCTGTTAGAACTGACCAGACTGAAGGGTCAGAGATGGAGAAGAGATAGAGATTCACCAGTTTATATCAAatcttattaattaaatgagtggttctcagccctggtcctggaggattCAGGGTTCAAATAAGTTACTGGGaacttggttggaacaaaaaacagcaggtaGAGGGTCCTCCAGTACCAGGTCTGAGGACTCCAGGACTGGTTGATACAACTGCAAGTGGAAAAACAACCACATTAATAAACCAGCTGAAACTGCGCATATCTCTTGGTAATGTATACCTGAATGTGAATGCTGAAGCATTCAATTCTTTGCTTGGAGttaattgtttataataatttaacccAAGATGTGGCTCAGATCAATCAATTACAAGTGCCTTAAGTCAACTGTTggaataacattaaaatgttttattaaaagccAGTTGACTGTTTTCACCAGCATTACCTGTTATTGATTCTGCAGAATTTTAAAAGAATAGATCTGAGATCAGTCTTTGatcttaaaatgtgttgttataGGCAGCCCACAGTATCTATTTCGAATTATCAATGTCGACCCAAAACTATTTGGAGAGTTCATGGCATCTCTTTAGTGAAGTTATTGACTCATTATCTGGCAATATTGCCTATGTAATCTTGTACATAATTCACCAAATAAACCATTTGGACCTTTTTGAAATagctacttttttattttttggtagtTGTTGGAGTTGAGTCTGGAGATTAAGAGGATTTTAGATCACTTATGCTCAGTTTTGTTGATGTTCTGTTAACTAAATCATCATCCATAAAGACTTCTGACCATATcaaatacactgaacaaaaactataaagtatttactgagttacagttcatataaggaaatcagtcagtTAAAATGAgtcattaggccctaatctatggatttcaagtctcaagttttgagggagcatgtGATTGGCATGTtcactgcaggaatgtccaccagagctgcaggcaGGTCAAGACCCTGATGAGGACGAAGAGCCGCAGATGGGCTTCTCCGAGACGCTTCCTGACAGTCTATGGAGACATTTTCAGTTGTGTAAACCCACAGAtctctggcagcagctctggtggacattcctgcagtcagcaggccaatcgcacgctccctcaaaacttgagacatctgtggcattgtgttgtgacaaaactgcacattttagagtggtgCACCTGTGTAAACATGTTGTTTAagcagcttcttgatatgccacacccaTCAAGttgatggattatcttggcaaaggagaaatgctcactaacagtgatgtaaaaaaatttgtgtataaaatgtgagagaaataaactttttgtaCATATGGgacatttctgggatcttttCCGCTCACGAAACATGAGACCAATACTTTGCATGTTGCGTTTAGATTTTTGTTCATTATATATTGCTACTTTTTATAGTACCGTCATGTAATTATATTGAGTTGTTGCCTAAGATGTCAGCCAAGGAAAATGAtattgaaaaattgaaataattacacTATTTTAGTGGCATAAAGACCTCCAAGGTATTTTCTGTAAGGAAATAATACACAGTTTCTCAGGCCAAATTCATACTAAACAAATTGTGGATTATTTTTGCTAATGCAGCACTTTGTTGTTATGAATCCTTTACAGAAAAGTGTTTGTTCACCttcatatacagtggggggggggaaagtatttgatcccctgctgat

Function

GO: NA

KEGG:

id description
K05473 TNFSF11, RANKL, CD254; tumor necrosis factor ligand superfamily member 11

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014594 True 3142 mRNA 0.39 4 18889772 18900200

Neighbor

gene id symbol gene type direction distance location
AMCG00014596 akap11 coding upstream 11499 18853308 ~ 18878273 (+)
AMCG00014591 dgkh coding upstream 43801 18803406 ~ 18845971 (+)
AMCG00014592 NA coding upstream 103245 18782057 ~ 18786527 (+)
AMCG00014587 NA coding upstream 215440 18668806 ~ 18674332 (+)
AMCG00014584 NA coding upstream 222646 18662208 ~ 18667126 (+)
AMCG00014595 dnajc15 coding downstream 49113 18949313 ~ 18963043 (+)
AMCG00014598 NA coding downstream 145483 19045683 ~ 19047641 (+)
AMCG00014599 NA coding downstream 148093 19048293 ~ 19056463 (+)
AMCG00014607 NA coding downstream 284079 19184279 ~ 19190953 (+)
AMCG00014613 NA coding downstream 293219 19193419 ~ 19196839 (+)
G71136 NA non-coding upstream 197139 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 411744 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 421437 18465219 ~ 18468335 (+)
G70938 LOC107575789,LOC100846954 non-coding upstream 1238770 17650771 ~ 17651002 (+)
G70908 NA non-coding upstream 1399165 17489826 ~ 17490607 (+)
G71183 NA non-coding downstream 1025 18901225 ~ 18902161 (+)
G71237 NA non-coding downstream 147758 19047958 ~ 19048172 (+)
G71283 tpt1,LOC106582181 non-coding downstream 318117 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 1024702 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 1286414 20186614 ~ 20186966 (+)
G71004 NA other upstream 615412 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1402722 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2420563 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2750740 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3203873 15675631 ~ 15685899 (+)
G71525 NA other downstream 3955142 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 8004677 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8935303 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8968503 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9402173 28302373 ~ 28304073 (+)

Expression


Co-expression Network