AMCG00014599


Basic Information

Item Value
gene id AMCG00014599
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19048293 ~ 19056463 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014599
ATGCGTGCGGGCAGTGACGGCGTCCGCACGGACACGCCGCCGCGCCGCATCGGCGCTTCTCGCAGGTCGCTGAACCGGGAAGCACTCGCTGCGGGACTAGCGCCGgtAAACCATGAAGCCGTGATTGTTGATCTTGTCCATGATAATTGTCTCCAGTATGAGGACTGTGTGGAGAAACGCCTAAGCAAGGCAGCAGATATCATAGGAAGCGAGCAAACTAAAGATGTATATCTCATGTTCAACCAGAACAACCCAACTACTGCCCACAGCTGCAAAAGCCTAATTCAAAATTTACTGAAAAAGTTTGACAGCCTTAAGGAAGTTACTCATATACTGAGCCAGCCATGTGTAGCTTCCTCCTTGTACTGCTTTAAACAAGCTATAGACAAAGCTAACCTCTGCACTGTGAAAATCATTACCTCTGCACAGGGAAAGACTGCATTGGAGGCCTACGTAGATCTGTTGTTCACAGCGGTCTACAGCTTTGAATATGAAGTGGTGTATGACAATTCACACTGTCCTGGCAGTGATCCCCCCACCACAAACAATACTGAGACCTTCCTCACTGGTGAGCAGCTGCAACATGCCAGAGAGGAAGTTAGCACTTTTCTCAGACAACTACCTGCTCTCAAAGGAGACATTACCATCCTGAGATCTCCTTTAATTTCAGgAGATCATTTTTTACATGGTTTCACCACAAGGACAGGTGGCATTTCCTATATAGAGACCCTCAGCTCCCTGAACCTCTTCAGCAGTTCGAAGCGCCGAGATCCCAAATCTGTTGTTGCTGAGAACATCCGCCGGCTGGCACTGGAGGCAGGATTTGATGAAACGAGGTTCCACCTGGTGAAGACCGATCACGCTAATGATGTGTGGGTCATAGGCAGAGAGGAGCCTGAGAGTTATGATGGCATAGTCACAAATCAGACAGGGGTGGTCATTGCagcccccggagcagactgcatTCCTCTGCTGTTCACTGACCCGGTCCGAAAGGCCATTGGTGTGGCCCATTCAGGATGGAGAGGTACCATAATGGGGATTGCCATGGCTACAGTCAACGCAATGGTTTCTGAGTATGGCAGTGCTGTTACGgacattgttgttattgttggcCCTTCAGTGGGACCATGTTGCTTTAAACTGTATGAAGAATCAGCCAAGGCTTTCCGTGCATTGCACCCTGACTGTGTCCAGAACAGGGGGTCATCCGCTTATGTTGACATAAGACTAGCCACAAgAGTTCTCCTTGAACGAGGGGGAGTCCTCCCTGACAACATCCAGGATGAGAGTGTATCTGAAGGACGGCAAAACCTTACCCTGTGCACATCTTGTCATCCTGACAAATTTTTCTCTCACGTCCGAGATGGAAACAACTTTGGCACACAGATGggatatttatcaattaaagaAGGACCTGATTGGGGTCACTGACATTGAATGGACTGCATGTGGGGAGAGATTATTCTGTACTTCTGAAGAGGTTTGCTCAAAGGAAGATGTGGAACCATCTTACACTCACGTGAAAAACGAGTTTGTCACGTGAGTGTAAGACCTACCAAGATAATGAACATGTTACAATGTGTAGGTTTGTCTAAGAATATGTATAGCAAAAGCAATGATGACTACAGGTTTTAGGTATTTCTGTAGGTCTGTATGTTCTATAAACAGGGAGATTGTTTATGGCGCTCACTCAGAAATCAAGAAGCTCAATTCTACATGTACCTCATTTGTCCTGCCTTTTATATTGTGAATACAAGTAGgggattcatttttttaattgcaaaggAAATTAACTGCACGCAATATAATACTGTGCCAGATTCCACTTAGAACTGATCAACTCTAATGATTATTCAGATAGGTAGGTAATTCCCCAAAACAAGTGCTTGTCCAGCATTGGatgaatacatataattaataataaataaagtagcaCATGAATTAtcttatgatttttgtttttatttaatcaaaaaacCTCTGTCAATAGGATAATCTGTTAGGAAACCCATTATTTATTATGCAGATAATGACAATACAATATACTATAGTAACATATTGTTATTGCTTGTCTGGTTGACAAGGTCCTCCTCACAATATAATTCACTAAATCCTAGCAAGGCTCAGCCCATTGTGTGACAGCGATAAATGACTGGTTATTTCCCATGTTACATGTATCATGACAAGGATCTATGATCATTACAAGTATATTATCTCCCCTCTCTAAATAACTTGTAGACATTTAATCTATGTGATATTTGCAGGCGTCAGGGCAACCACAATCCAGTCAGGATACTGTTGTAATTTTTGTGGGTATTAAATCCAGAATCCTAATAGAATCCATTAATGCAAGCTTTTTGTGCCTGGAGTATCTACCCACTGCAGTCCAGCAGAGGTCACTGTTgctgcatgtatgtgtgtgatacAACTTGCTTACTCGcttcaaataaatcatgttCAGGCACATATCCAAAATATACTTATCTGGATTGGGTTTATGTGCTTATCAGCAGTGCTGCAATATCACAAAGGCTAGCTGTGACATTTGGCAAAGCTAAGGAAGTAACATTTCATGGAGTAGTCGTAGgtaaacacaacacaagctTTATCTGCAATGCTAGGTGTAAAGTGCCCAGGTTACAGGGAATACAGTTGTGATGAATCTCATTGGAGAGACATTGCTGTATAGGCAGCTTCTCTGCTCTCTGGCAGATTGAAGACCATTGCAGCAGAACTGGGCTTGGTCCTGGCACAGACCGCAGGACAGTTCAGCGTTCAGTGCTGGTATTTCTAAGTGGACAAGCAATATTTCCCTCTGCTGCAGAGAGACTGACTTGTTTTCATAGTTAATgttatgtatttgaatttggacagatacaaattaatataaagtataatatagtTTGCATAATTTGCAGGCTAGTAGCAGAGGATTCTTCAATGGATAATTTACATGGATTCCTAATAGagaagaaatcaaatcaattaattttgtaAGAACAGAAAATACCCTCAACGAAAGGTGTTGAAAATGGTAAGGACAGAGTGACCTTTCTCGCACCATTAAATCACTAAGCCACTGCCTGTTTAGTCCTGTCTTTCAATGATGTGTTGTAGTGTGATGACTCTAATCTATTAAGTAAAGTAGTGAGGATAATATGCAGATGGCTTTAGTAGGTAGTTTGATTGAATCAGCCAGCTGGAATACTGAGTTCCACATGACTGAAAATTACCGTTTTGTGAATGTGATCATTATTGATGTAAGTTGTCTATTACACTGCACATTAATATACCACTATATGTAATTGTACTTGCATTAATATGTTGGTTTAATT

Function

GO: NA

KEGG:

id description
K05810 yfiH; polyphenol oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014599 True 3338 mRNA 0.42 9 19048293 19056463

Neighbor

gene id symbol gene type direction distance location
AMCG00014598 NA coding upstream 652 19045683 ~ 19047641 (+)
AMCG00014595 dnajc15 coding upstream 85250 18949313 ~ 18963043 (+)
AMCG00014594 NA coding upstream 148093 18889772 ~ 18900200 (+)
AMCG00014596 akap11 coding upstream 170020 18853308 ~ 18878273 (+)
AMCG00014591 dgkh coding upstream 202322 18803406 ~ 18845971 (+)
AMCG00014607 NA coding downstream 127816 19184279 ~ 19190953 (+)
AMCG00014613 NA coding downstream 136956 19193419 ~ 19196839 (+)
AMCG00014612 gtf2f2 coding downstream 157813 19214276 ~ 19216333 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding downstream 167318 19223781 ~ 19236789 (+)
AMCG00014608 cog3 coding downstream 181107 19237570 ~ 19252607 (+)
G71237 NA non-coding upstream 121 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 146132 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 355660 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 570265 18477043 ~ 18478028 (+)
G71036 kctd12 non-coding upstream 579958 18465219 ~ 18468335 (+)
G71283 tpt1,LOC106582181 non-coding downstream 161854 19218317 ~ 19222919 (+)
G71362 NA non-coding downstream 868439 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 1130151 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1868105 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 2255127 21311590 ~ 21312022 (+)
G71004 NA other upstream 773933 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1561243 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2579084 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 2909261 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3362394 15675631 ~ 15685899 (+)
G71525 NA other downstream 3798879 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7848414 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8779040 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8812240 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 9245910 28302373 ~ 28304073 (+)

Expression


Co-expression Network