AMCG00014600


Basic Information

Item Value
gene id AMCG00014600
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19174682 ~ 19184193 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014600
AAAACATGGTAGGCCTGCTATATGGTACAGGGGAATGGATGCCCGTTGTTAGGAGATGTTTTTGTCACAGTCTAGTGTTAAAATGCTGAACTGCATCGTTTTGATTCCCGGACGTGACGTATGCCGGAAAATGCACATGGTTGTGTGGAGAAGCTAGACATGTGAGAGATAGCAAACAAATCGTGGTGAAGGGTTTAAAGTGCGGTGCCAGGTCTTGAGATTTGGtggaaaggaaaatattaacaTGATGAATAATTTCGGACATTACCCCCCACCAGAGTTTAGCTGTCCTCCTCCGGGACCTATGCTTAGACCGCCGGTATTTCATGGGCCACCTCCAGGACCTCCTGGCCACTTTTATCCAGGTTACAGCAACTGGTTTGGACCTCCTCCGGGCCAGGGCTTCTACCCACCTCCAGGATGTTGGTATGGGGGACAAAGTCAGCAGCAACCTGGGTTTACTAACCAAATGGATGATCAAGTGAACCAATTTCAACATCTCCCAGACTCACAAGTGGGACAGGGCCAacaaggaggaggaaaaaagaaaaagaagaaggagcCTGTGTTCACACACTTCTGTGACACGTGTGACCGTGGGTTTAAAAACCAGGAGAAGTACGAAGAACACAGGTCTCAGCACATAAAGtgttcTGTAGTTGGCTGCAATTTTACTGCCCACGAAAAGCTGGTCAGCATTCATTGGAGAAATATGCATGCCCCAGGAGCAAAAAGAATAAAACTTGATACTCCAGAGGAAATTTCAAAatggagagaagaaagaaaaaaGAACTACCCTACTCTGACTAATATTGAGAGGAAGGTCAGGATGAGGCAACACAAGGAGGAACGAGGAGATGTGCTGGAGACAGCAGAGTTTGgACGGATGAAGAAGAAAGGAAGTTGGAGAGGTCCTGAAGCGCAGAATATGGGTCAGAACTGCCCATCTCGAGGAAGGTTTCAGATCTCTCAGAAAAGGCCCTGGAACCAGATGCAGAAGGACCAGCTGATTCATGGTCCAGAGAGCAACGTAGCTGAGAAGCAAGCCGGTACACAGAGCATACCCGAGGGAGACCCATTAGGAGCTCTAGTCAACAGCGACTCAACAGATTCAGACAAGGATGAAGCGGCGCCCAGTGTGTCGGTGACCCCAAAACAGATGACCTCGGGTCTGTGCTCCCTTGTTGCCAGCTATGGCAGCACATCgggcagtgacagtgacagcGACCAAGCCCCTGATGAAATGCCCCTCTTGAAAATCTCTAAAGTTGTGGAGGAAAATCAGGCTCTGTTGCGGGCTGTGGCAGAGAGCAGGAATCCCAGTGACGGCTCAGCAAAGCACTGTGAAAACAGGGGGCCGCAGCCCCAGCCTCCCACCAACAGGGGGCAGTTCAACCCTGGCCAACGCAGGAGAGGCGGCCGTCGCCCTCCGCCCAGAGGCGGCCCTGTGCCCCGCCGGCCGACCCTGCTGCAAATGCTGCTTGCTCAAGACATCCGTCACGAGAGAAATGTGATCTTGCAGTGCGTTCGCTACGTCGTTCAGAATGACTTCTTTAGGACTGATAAAAAGACTACACAGGCCCAAGAAGTGAGTCCTGTGCAGGATGATCAAGCTGAGAATGGTGCCTCTTCCCCAGCGGGCTTGGAGGAGGCTGCACAGAATGAGGAGCCACGACCAGCTGAGCCGTCGCCGGTCTCTCCTTCCCGAGAACACCTGGCTGAGCCCGAACTGGCACACACTGAAGACGCACCTGTCACACAGGTGGTCGACGACGAGATTTGGGAGATTCCAGCAGTTCATCCCGAGAGCTGCTACTGATATCCGTACAATGTTTCGATTAGTTTACAAATCCATCAACTtgattatgaattattttttacagattttatgtTGGTTCATTGACTCactcaaattaaatgcaagtaTTTCCAAATATTGTGTGTTCTTCTTTtatagatgtttatttttgtggggTTTAATTTTGAATGCTTAGCCTTTCCCAATTAAGAGTGGTTTCCGGTTAATAAAATTGTCTGATCAAAATGACTCACTTGGGAGAGATGTAGATGCTTGCATCCcctgtagtgttcagtcagaCCACCTGTTCACAGTGAGAGAGCACAAGTGATCCTGTTGCCCCATGCATAAAAATGAAGAGAATTTAATAGAACAGCATTGTTCTGTTGGTTGTGGACGTCAGCAAATAACTAGTGCAGCGTGTAC

Function

GO: NA

KEGG:

id description
K23308 NUFIP1; nuclear fragile X mental retardation-interacting protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014600 True 2224 mRNA 0.49 10 19174682 19184193

Neighbor

gene id symbol gene type direction distance location
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding downstream 11895 19159929 ~ 19162787 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding downstream 51856 19114367 ~ 19122826 (-)
AMCG00014597 NA coding downstream 175665 18971436 ~ 18999017 (-)
AMCG00014593 NA coding downstream 227761 18932137 ~ 18946921 (-)
AMCG00014590 vwa8 coding downstream 397074 18776776 ~ 18777608 (-)
AMCG00014615 NA coding upstream 146695 19330888 ~ 19338660 (-)
AMCG00014614 NA coding upstream 157938 19342131 ~ 19345670 (-)
AMCG00014616 NA coding upstream 202422 19386615 ~ 19390852 (-)
AMCG00014623 LOC108428456 coding upstream 1174953 20359146 ~ 20401033 (-)
AMCG00014621 NA coding upstream 1267991 20452184 ~ 20458681 (-)
G71179 NA non-coding downstream 296429 18874605 ~ 18878253 (-)
G71174 NA non-coding downstream 323571 18850724 ~ 18851111 (-)
G71160 NA non-coding downstream 487336 18686498 ~ 18687346 (-)
G71157 NA non-coding downstream 505027 18668801 ~ 18669655 (-)
G71133 NA non-coding downstream 510051 18664264 ~ 18664631 (-)
G71284 NA non-coding upstream 7192 19191385 ~ 19191632 (-)
G71290 NA non-coding upstream 28451 19212644 ~ 19214404 (-)
G71291 NA non-coding upstream 30421 19214614 ~ 19215246 (-)
G71292 NA non-coding upstream 32020 19216213 ~ 19217037 (-)
G71315 NA non-coding upstream 68381 19252574 ~ 19255934 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 1152587 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1553531 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1712392 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2436805 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 6040931 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 17610 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 33529 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3041731 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8101227 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8151502 27335695 ~ 27369527 (-)

Expression


Co-expression Network