AMCG00014601 (tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883)


Basic Information

Item Value
gene id AMCG00014601
gene name tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19114367 ~ 19122826 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014601
ATGAGAGAAACGGCTCTGCGGGTACAAGGCCGGAACGGGATGGCCCTGAAACTACTGTTTTGGGAGCTGGAGCAGCATTTGAAAAGTTCTTCTGGTGCCAGTGTGGTGGCCATAGACAACAAGATTGAACAAGCGATGGATCTAGTGAAGAGTCACTTGATGTACGCGGTGCGGGAGGAGGTGGAGGTTTTGAAGGAGCAGATTAAGGAACTGATCGAAAGAAACTCGCAGCTGGAGCAGGAAAACAACCTGCTGAAGAACCTGGCGAGCCCGGAGCAGCTCGCCCAGTTTCAAGCACAGCTACAGAGCGGCTCGCCGCCGGCTGCCACTCAGCCCCCGGCGACAGCAGCTCCGCCAGCCCCTGCGCCTGCCCAGCCAGCCTCGCAGAGCACCGGCCCGTCCGCGTAGCGCCGTGGGACCCCAGTGAAGGGGTGCATCTAGGGAACTCAAAACTACAAACAGACTCGCTGCAATCGCAGGAATATTGCATtcaaaatgtgcacatttcattttccaaCTTGATAAGTGtgcatataattatatatatatacaaattatgtatatgtatataattatatatctatatgtcaTTTCCTTACCCTTTAAGAGGCTTTACACACTTAAGACATTCGTCTTTCTTTCTGCAAAAGACTGTCAACAGATGACGAACTTGCCCGAATCCGTGGACTACTGACGTCATTTCGACTCTTATTTGGTGACGTAGGGATCTCCGCGGCTGAGTGAGGGACGTCAATCCTGATTTCAGCGGGACTCCCGGATTCTACACATGTTACCCAGCTCATTGAAATGTGTAGTGTATATATCATACTTTGTGAAGGCTGTGAGTAATTAGAACAAGCACTTTCTTGGTGGCAAATGTGAAGGAACCCAGAGGACCATAAAGATGACCGAGAGCCCCATCTGGAATGGGGGAAACTAAGCAGGAGATAAGTGACTTATATTATGCATCAACCGCATCTTGTTCGTTTGGATGAAGGGGAAACGGTTCCATAAGGTGGTGTAAATaatttttcagtatttaagtTTGAACTGTCCTTGTACTTGCCCCCTTAAAGTTTAGGCTGCTGATTTTTCAAGCAGTTATGAGGTGCAGGAAGGGGAGAAGGAGACGTTTGGGGTTTAGCTGAATTGCAAGGGTTGTTAGccttatgtatatttgtgtatttagtgTAAGTACTCTGTAATATAGTATACACTGTAACTATTTAGATTGTACAGATTGAAATCTAGCTGTTTCATTGGCTGACCTGAGCAAGTTTGGACAGTCTTTTTTTATGCTGTAAATCAGGAATGCAGCTTTTCAACTGTTGAGAACATGAAACTGACAGTGACTTGTGTTTTCTCGTTTTCTTGGCTGCATTAAATACTACAGTAAACCGATGTTCACTTGAAGTTATACGAAGAATTAAAGCACCATTGtgaacttttgtttgttttcttttgacagTGAAGCAATCCGGATGTTCAACAATTACTATTgatgacattaaaacaaatctgatatGATATTTTGCATATACGTACAAGTTGTATGCTTATGTTTTGTGCATGTTCctctggaagagaaaaaaaaaagttgtaacaAAATTCAGTTGCACCTGACTGTTGCACTTCTcaactttcaataaaaaaagcaaaaccgA

Function

symbol description
tsc22d1 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in several structures, including forerunner cell group; mucus secreting cell; nervous system; pronephric duct; and pronephric mesoderm. Orthologous to human TSC22D1 (TSC22 domain family member 1).

NR:

description
PREDICTED: TSC22 domain family protein 1-like isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014601 True 1664 mRNA 0.43 3 19114367 19122826

Neighbor

gene id symbol gene type direction distance location
AMCG00014597 NA coding downstream 115350 18971436 ~ 18999017 (-)
AMCG00014593 NA coding downstream 167446 18932137 ~ 18946921 (-)
AMCG00014590 vwa8 coding downstream 336759 18776776 ~ 18777608 (-)
AMCG00014589 vwa8,LOC107579031 coding downstream 347707 18720805 ~ 18766660 (-)
AMCG00014588 vwa8 coding downstream 404958 18696075 ~ 18709409 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding upstream 37103 19159929 ~ 19162787 (-)
AMCG00014600 NA coding upstream 51856 19174682 ~ 19184193 (-)
AMCG00014615 NA coding upstream 208062 19330888 ~ 19338660 (-)
AMCG00014614 NA coding upstream 219305 19342131 ~ 19345670 (-)
AMCG00014616 NA coding upstream 263789 19386615 ~ 19390852 (-)
G71179 NA non-coding downstream 236114 18874605 ~ 18878253 (-)
G71174 NA non-coding downstream 263256 18850724 ~ 18851111 (-)
G71160 NA non-coding downstream 427021 18686498 ~ 18687346 (-)
G71157 NA non-coding downstream 444712 18668801 ~ 18669655 (-)
G71133 NA non-coding downstream 449736 18664264 ~ 18664631 (-)
G71284 NA non-coding upstream 68559 19191385 ~ 19191632 (-)
G71290 NA non-coding upstream 89818 19212644 ~ 19214404 (-)
G71291 NA non-coding upstream 91788 19214614 ~ 19215246 (-)
G71292 NA non-coding upstream 93387 19216213 ~ 19217037 (-)
G71315 NA non-coding upstream 129748 19252574 ~ 19255934 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 1092272 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1493216 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1652077 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2376490 16722073 ~ 16737877 (-)
AMCG00014412 LOC106574775,LOC107704546 other downstream 5980616 13087608 ~ 13133751 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other upstream 78977 19201803 ~ 19203567 (-)
AMCG00014603 tpt1,LOC106582181 other upstream 94896 19217722 ~ 19225230 (-)
AMCG00014630 LOC107672672 other upstream 3103098 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8162594 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8212869 27335695 ~ 27369527 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_037730 tsc22d1 coding NC_007120.7 CM002893.2 18732505 ~ 18814737 (-)
grasscarp (Ctenopharyngodon idella) CI01000340_19316093_19318111 TSC22D1 coding CI01000340 null 19315986 ~ 19318406 (+)