AMCG00014603 (tpt1,LOC106582181)


Basic Information

Item Value
gene id AMCG00014603
gene name tpt1,LOC106582181
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19217722 ~ 19225230 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014603
CTGAGCTCGACAGAGGCTTTTAATGTCCGGAAACCTACCATTGAGATGGTCAATGGGAAAGCCTCCAGACACCAACGACTGCGCATGCAAATTTCTACCGGGCATTAATCCAAAACTGATAAAGGGAGATCATCTCAATAAATGTCCAAGATATCAACACTGTAAAAAGAGACTTTACTGGATGACGTCATCACGGCCGCTAGTATCTAAGTTGGGGGAAAGGGTGTACCGGTCCTTTTCAGCCGAGTCCGCAAgcggggagagcaggagccatCTTTGACGCAAGTCCTGAAACACAATCCAACAGAATGATCATCTACAAGGACATCATCACCGGGGATGAAATGTTCTCGGACATTTACAAAATCAAGGAATCACCCAATGGGATCTTAATAGAAGTAGAGGGAAAGGTCGTCAGCCGGAGTGATGACATTGACGATGCTCTCATTGGTGGGAATGCTTCGGCAGAAGTGGTGGAAGAGGGAGCCGAGGCGTCCACGGTCAGTGGAGTAGACATTGTTTTAAACCACAAACTTCAAGAAACTGGCTTCACAAAGGACACCTTCAAAGCCTACATCAAAGACTACATGAAGGCAATCAAAGCAAAACTCGAAGAGACTAAGCCAGAAAGAGTAAAGCCCTTCATGGCCGGAGCAcaagaagaaatcaaaagaattATGGCCAATGTGAAGAACTATCAGTTCTTCACAGGTGAAACCATGAACCCCGATGGAATGGTTGGATTATTAGACTACCGTGAAGATGGCATCACTCCATTCATGACCTTTTTCAAGGATGGCCTGGAAATTGAGAAATGTTAACACGTCAGGATATCACGTTTTGCTCCCCACCCATCCTAACCGGCTGCTGCTTCTCATCAAGATTTAGACGAGAATATGGACTGGACttcattttgttcttttgtttggaatgaaaacattgttttaaattgtaatgtcaaatttaaaataaaacactttttggCCCTCAGACAACCACCAGTCTTCATGACCTGAATTGTAAATGGCGGAGACCATCAGGacattttacagaacattttTATCAACAGGTATCAAATTGTCTGATGTGAGTGTTGCAGTATGAAACTTCTTCTAAATGGAAATGCCTTCAGAGCAAGAAAATCTCAATTGGAGTCCTCTTTTTATTTGGGTTTTCAATTCATCGGTTCAAAAAACATCTCCAGCATCATGGTTTGCTCTATGTATTCAGCTGCATCTGATGtatctccctctcccccaggATTGTTCAGCTACTGCCATGACTtgtaaaaacagaataaaccaCTGGACAAAATGTCTCATGATCTTGTATTTCATGTCTTTGGTTTAGATTTAATGTTTATTGGTGCTTTGTCTTGACTGCAGTCTTTAATTATCTGCAGTAAACCTGTGAATGgtgaaatattatttgaattggAGATTACCTGAAGGTTTTATGTATTGTAGTATCCCTAAAACATGATCAAATCGGTGTTAACCATTTGGGAATTAGTTTGTGCGTTATAGGACATTATTAATACAGGAAATGTATGAATGAGGGAACTAATCCTCAAGTCTAGTTGCATTTAATGTGTAGTTTGTAAATCTAATCAGTTTAATATCTGCAATTAAACTGATCTGCATTGTGGTTATATACAACTGTGAAATCTACATCGATGGCATAGAAGTTTACAACCTCAGTCAGTCTTTACATGAAAGTGTTTGGAAAATTAACATCTTCAATACCCTTGTACTtgacacacagatatacacaagCTGTCTAGGTGGGTCAGaaaaatattgatgtatttacaaaactaaattgatttaaaaacaattttccaacatacaattcaaattgaataataaaagaACTGATACTGTTCTTAAGTGGTAACCACAGAACCTAGAAGTATTTGTGAT
>TU89167
GTGCGTTATAGGACATTATTAATACAGGAAATGTATGAATGAGGGAACTAATCCTCAAGTCTAGTTGCATTTAATGTGTAGTTTGTAAATCTAATCAGTTTAATATCTGCAATTAAACTGATCTGCATTGTGGTTATATACAACTGTGAAATCTACATCGATGGCATAGAAGTTTACAACCTCAGTCAGTCTTTACATGAAAGTGTTTGGAAAATTAACATCTTC

Function

symbol description
tpt1 Predicted to enable calcium ion binding activity. Predicted to be active in cytoplasm. Is expressed in brain; eye; lateral mesoderm; liver; and spinal cord. Orthologous to several human genes including TPT1 (tumor protein, translationally-controlled 1).

NR:

description
PREDICTED: translationally-controlled tumor protein isoform X1

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014603 True 1922 mRNA 0.39 7 19217722 19225230
TU89167 False 225 lncRNA 0.32 1 19217904 19218128

Neighbor

gene id symbol gene type direction distance location
AMCG00014600 NA coding downstream 33529 19174682 ~ 19184193 (-)
AMCG00014602 tsc22d1,LOC107713726,LOC107551985,LOC107748883,LOC107576221 coding downstream 54935 19159929 ~ 19162787 (-)
AMCG00014601 tsc22d1,LOC107551985,LOC107713726,LOC107688650,LOC107748883 coding downstream 94896 19114367 ~ 19122826 (-)
AMCG00014597 NA coding downstream 218705 18971436 ~ 18999017 (-)
AMCG00014593 NA coding downstream 270801 18932137 ~ 18946921 (-)
AMCG00014615 NA coding upstream 105658 19330888 ~ 19338660 (-)
AMCG00014614 NA coding upstream 116901 19342131 ~ 19345670 (-)
AMCG00014616 NA coding upstream 161385 19386615 ~ 19390852 (-)
AMCG00014623 LOC108428456 coding upstream 1133916 20359146 ~ 20401033 (-)
AMCG00014621 NA coding upstream 1226954 20452184 ~ 20458681 (-)
G71292 NA non-coding downstream 685 19216213 ~ 19217037 (-)
G71291 NA non-coding downstream 2476 19214614 ~ 19215246 (-)
G71290 NA non-coding downstream 3318 19212644 ~ 19214404 (-)
G71284 NA non-coding downstream 26090 19191385 ~ 19191632 (-)
G71179 NA non-coding downstream 339469 18874605 ~ 18878253 (-)
G71315 NA non-coding upstream 27344 19252574 ~ 19255934 (-)
G71360 NA non-coding upstream 567569 19792799 ~ 19880231 (-)
G71371 NA non-coding upstream 847795 20073025 ~ 20078009 (-)
G71379 NA non-coding upstream 961399 20186629 ~ 20186968 (-)
G71451 NA non-coding upstream 2772692 21997922 ~ 21998188 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 14155 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 1195627 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 1596571 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 1755432 17446868 ~ 17462290 (-)
AMCG00014539 wdr3,LOC107569352,LOC107658238,LOC107712260,LOC107724477,LOC107668854 other downstream 2479845 16722073 ~ 16737877 (-)
AMCG00014630 LOC107672672 other upstream 3000694 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 8060190 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 8110465 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 9104509 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 10164060 29389290 ~ 29398305 (-)

Expression


Co-expression Network