AMCG00014611 (LOC107384298,LOC104941757)


Basic Information

Item Value
gene id AMCG00014611
gene name LOC107384298,LOC104941757
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 19319869 ~ 19330918 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014611
ATGAGCACGCCGAGCGCCGCGCTTCCGTCCCCGCAGCCCGCAGCTCGTCCAGAACTTTCCGAGCGGAGCCCGACTGAGCAGCGTCTCATGGAGGACCAACGGCAAGTATTCTCGGACAGCCTCATAGACGAGGATCCCCAGACAGCGCTGGAGGGGCTAAATGGGGCTTTGGAGCAGACTTCGGATAATGCCGAGCTGTACTGTCAGCGTGCTTACGCCCATATTCTACTGAAGAATTACACCAGTGCTGTTGACGATGCAAAGAAAGCCATTGAGCTACAGCCAAACTTTGCTCTGGCTTACCTAAGAACAGGAAATTCAGCTTTCTCCTCTTTTGATTCAGAATCAACCTTTCAAGTTTGGATTAAACGATGTGAAGAAAGCCTGGGTTGTAAGTCTATCTATATTCTCTTTTTCTGGTctagGTATGATTGGTACCAGACAGAATCTCAAGTTATTGTCACAATCTTGGTCAAAAATACCACAAAGGATGATGTTAATATTCAGTTTGAAGAGAGAATGCTGCACGCAGCAATAAAACTGCCCTCGGGAGAGGACTTCAATTTGGAAACTCATCTCCTTCACCCAATTGATCCTCagcaaagcacatttaaaattcTCTCGTCAAAGTGGAGCACGTGTTCGCAGTGTCCCATTAGCACAGTGGCAGGGCTTCAGCAGCTGGCTGCTCAGCACAGGTCAGCCTTCACAAAGCCCTGTTTGTTCTGCGGCCTGAAGGCTCCCCAGattgaaattaaaatgagaaagACTGAAGCTATCAGATGGGAGAAACTAGAGGGGGAAGGTGCCCAGGCATGTGTGAAGCACTTCACACCAAGCCAATATCCTTCCTCTTCACATTATACAAAAAACTGGGACAAGCTAGTAGTGGACAtaaaagaggaggagaagaatgAGAAACTAGAGGGCGACGCTGCCCTAAACAAGCTGTTCCAGCAGATCTACTCGGACGGCTCCGACGAGGTGAAACGGGCCATGAACAAGTCATTTATGGAGTCTGGAGGCACAGTCCTGAGCACCAATTGGATGGACGTCGGCAAACGGAAAGTAGATGTGAGTCCTCCCGATGACGCGGAATGGAAGAAGTTTTAAAGGTTTCATCAGCCTTCGAAAAATCAGACGCTTTTCTTTGGCCTTGTGTACCCTTTTGTCTACACAATTGGATGTTTGGTTCATGCACTGAGAATGCACTAGAATTCATTATGCCCCCTTTTCACTTCTTGGCATGTGTTTTAGGAGACCTGTAACAGTGTTTTAGGAAAAGATGTGACGGAGgaatttgttaatttttaaatgaaaaataattgtacatttaatagATTTATAATCTTTTATTAAAGTTGATCTTTTCTGCatcttttttatgtaaatgattTCATAAATGTTGCATTGGAATATTAAACTGAATTCATTATACTCCATTCTACTTTACATAAAGGACATGCTAGTCGGGGCATTAAGTTTTACAGTGTGCATGTAGAGGGTTACTTTACAAAAGAtgatgaagaaaatgtaaataaatttgTCTGATCTGGTTAGTTTGaattgattgtatttaattctgCAGCATTTAATACTTCAGGATATCAATTACCTTAATCTTTGTGTAATTCATACTGTACATGAAGTCCTCTAATTACTTCAAAGTTTATCATATAGGAggataatcaaattaaattactttctcATGGGTGGGGATTGAAGTAAAAGATTGTTACACATCATTTAGTTCACCTTTAGTTCATGCATTGATCATAGAGAGGTTTACAGCATTCTTGTTTATCACTGTTCCtttgctcattttattttctgtactgtCTGATCAGTAGGATGTTACTGACTTCAGACCATAATCATTACAACCATAAATTAccttcattcattatttttgataTGTTGCTTGTCACATTGCTATAGATTTTTTT

Function

NR:

description
PREDICTED: protein SGT1 homolog

GO: NA

KEGG:

id description
K12795 SUGT1, SGT1; suppressor of G2 allele of SKP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014611 True 1946 mRNA 0.41 12 19319869 19330918

Neighbor

gene id symbol gene type direction distance location
AMCG00014606 NA coding upstream 2614 19296416 ~ 19317255 (+)
AMCG00014609 ednrb,LOC108434743,LOC107658690,LOC107566659,LOC105911940 coding upstream 28119 19285333 ~ 19291750 (+)
AMCG00014608 cog3 coding upstream 67262 19237570 ~ 19252607 (+)
AMCG00014610 slc25a30,LOC105911955,LOC100698510,LOC104935787,LOC102198731 coding upstream 83080 19223781 ~ 19236789 (+)
AMCG00014612 gtf2f2 coding upstream 103536 19214276 ~ 19216333 (+)
AMCG00014605 NA coding downstream 49513 19380431 ~ 19384319 (+)
AMCG00014617 NA coding downstream 512234 19843152 ~ 19844042 (+)
AMCG00014618 NA coding downstream 628671 19959589 ~ 20021694 (+)
AMCG00014619 NA coding downstream 693603 20024521 ~ 20073070 (+)
AMCG00014624 NA coding downstream 1315421 20646339 ~ 20667180 (+)
G71283 tpt1,LOC106582181 non-coding upstream 96950 19218317 ~ 19222919 (+)
G71237 NA non-coding upstream 271697 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 417708 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 627236 18688548 ~ 18692633 (+)
G71038 NA non-coding upstream 841841 18477043 ~ 18478028 (+)
G71362 NA non-coding downstream 593984 19924902 ~ 19925198 (+)
G71378 NA non-coding downstream 855696 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 1593650 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 1980672 21311590 ~ 21312022 (+)
G71452 NA non-coding downstream 2788665 22119583 ~ 22122533 (+)
G71004 NA other upstream 1045509 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 1832819 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 2850660 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3180837 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 3633970 15675631 ~ 15685899 (+)
G71525 NA other downstream 3524424 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 7573959 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 8504585 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 8537785 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 8971455 28302373 ~ 28304073 (+)

Expression


Co-expression Network