AMCG00014619


Basic Information

Item Value
gene id AMCG00014619
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20024521 ~ 20073070 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014619
ATGtatctttccattttctttttccttctgctCTGGGCTCAAGCCCTGACACTGAAGAACTTAAATTACTCTGTCCCGGAGGAGCAGGCGCCGGGCACCGTGATCGGAAACATTGCCAAAGATGCCAGGCTGGGCGCCGGAGAAAGAGGCAAGAAATCCAACTTTCGGGTGTTAGAGAATTCAGCCCCTCACCTCATTGATGTTGATCCTGAAAGCGGACTGCTGTATACTAAGCAGCGGATCGATAGGGAAACACTGACTGTCCATCCTTTCTGGGAAGAGGTTGCCCCAGTTGTGGAGCTTATAGTAAAAGTTACAGACCATGGGAAGCCAACCCTCTCGGCTGTAGCAAAACTAATAATCAAGGCTTACACTGGATCGCTGCCGGAAGGGGAGCCCAGAATAAACGATGAGCAGCGTCACTGGGACATGTCTTTGCCTTTGATTGTGACTCTGAGCATCATCTCCATCATTCTTCTTGCAGCTATGATTACCATAGCTGTGAAGTGTAAACGAGAAAACAAAGAGATCAGGACTTACAACTGCAGGATAGCAGAATATTCCCACCCACAATTGGGCAAAAGCAAAAAGAAGAAGATTAATAAAAACGACATCATGCTGGTACAAAGTGAGGTGGAAGAGAGGGATGCAATGAATGTTATGAATGTGGTTAGCAGCCCATCACTTGCAACTTCCCCCATGTACTTTGATTACCAGACAAGATTACCCCTCAGCTCCCCCAGGTCAGAGGTAATGTACCTCAAGCCCACGTCTAACAACTTGACTGTTCCTCAAGGGCATGTTGGCTGTCACACCAGCTTCACTGGACCAGCAACGAATACAACCGAGACTCCAGTTAATAGGATGTCAATAATTCAGATTCTAATTTCAACTGATCCCCACGAAAGGTTTCACTCTTCAACTGTGAAGACAGACAATTTTCCCGCAGAGCCCAATTACATGGGCAGCAGGCAGCAGTTTGTTCAAAGctCCACATTCAAGGACCCTGAACGTGCAAGCCTTAGAGACAGTGGGCATGGGGACAGTGACCAGGCTGATAGTGACCAAGACACCAACAAAGGCTCCTGCTGCGACATGTGCAGCTCTCGCCTGTCACAGATGCTCCATGCTGCATCCAGCTGCCATCGAATTCAGTTCGAGtcagACATATTCTTTATGaacaAGAAGAGTGCGTTAATTGCACGGATGAGTGTCGAGTACTAG

Function

GO:

id name namespace
GO:0060219 camera-type eye photoreceptor cell differentiation biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014619 True 1224 mRNA 0.48 9 20024521 20073070

Neighbor

gene id symbol gene type direction distance location
AMCG00014618 NA coding upstream 2827 19959589 ~ 20021694 (+)
AMCG00014617 NA coding upstream 180479 19843152 ~ 19844042 (+)
AMCG00014605 NA coding upstream 640202 19380431 ~ 19384319 (+)
AMCG00014611 LOC107384298,LOC104941757 coding upstream 693603 19319869 ~ 19330918 (+)
AMCG00014606 NA coding upstream 707266 19296416 ~ 19317255 (+)
AMCG00014624 NA coding downstream 573269 20646339 ~ 20667180 (+)
AMCG00014632 nfip2,LOC107750051 coding downstream 2174711 22247781 ~ 22264000 (+)
AMCG00014635 NA coding downstream 4309697 24382767 ~ 24385815 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding downstream 4619216 24692286 ~ 24759297 (+)
AMCG00014638 NA coding downstream 4815463 24888533 ~ 24897009 (+)
G71362 NA non-coding upstream 99323 19924902 ~ 19925198 (+)
G71283 tpt1,LOC106582181 non-coding upstream 801602 19218317 ~ 19222919 (+)
G71237 NA non-coding upstream 976349 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 1122360 18901225 ~ 18902161 (+)
G71136 NA non-coding upstream 1331888 18688548 ~ 18692633 (+)
G71378 NA non-coding downstream 113544 20186614 ~ 20186966 (+)
G71414 NA non-coding downstream 851498 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 1238520 21311590 ~ 21312022 (+)
G71452 NA non-coding downstream 2046513 22119583 ~ 22122533 (+)
G71459 NA non-coding downstream 2115569 22188639 ~ 22188927 (+)
G71004 NA other upstream 1750161 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 2537471 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 3555312 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 3885489 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 4338622 15675631 ~ 15685899 (+)
G71525 NA other downstream 2782272 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 6831807 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 7762433 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 7795633 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 8229303 28302373 ~ 28304073 (+)

Expression


Co-expression Network