AMCG00014622 (LOC106574996)


Basic Information

Item Value
gene id AMCG00014622
gene name LOC106574996
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20701824 ~ 20708613 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014622
ATGAATGACTCCTACAGTCGAATTCAGCAGGCAAAGAAATCAGAAGAGGAATCGGAACCAGCTGCCACTCCGATCGCATTTTTCACCGTAAAGAACCCAGATCAAAAGCAAAAGGTGGACTGCTACCTGGAGGGTGAGGGCCCTTTCAGGTTATCACTTTATAAGTTATTCAGGAATGAATATTTGCTGGAGAGTATAGGGCCTTTGGACTTTGAGATGAAACAAGATTATGAACTCATGATAGTTGCTAACAGTTCAGTGGGTTTTGTTCTGAAAACACTCATTAAAGTTCAAGTAATTGATGAGAATGATAACACCCCTATTTTTAGGCAGCCTCTGGTTGATTTgttaattgaagaaaacaatGCCCCCAACACCTTCCTGGCCAAACTGCTGGCAACAGACGCAGACAGTGAAATCAGAGGTGAGGTGTTTTATTTGATGGGGCCTGATGCTCCTTCCATTTTCACAGTGGACAAAGCTACTGGAGTCCTCACGGTCTCCACCTCCCTCGAccgagaagaaaaagaaaagtacaggTTCACTGTTAGAGCGGTGGATCGCGGATTGCCCCGGAAGGAAGCTATAGCTACTGTAGTCATCACAGTGCTAGACAGAAATGACAACAGCCCTCGGTTTATCAACAAGGACTTCAGCTTCTTTGTACCTGAAAACTTTCCAGGTTTCGGGGAAATTGGAGTTATTTCTGTCACTGATGCCGATTCTGGAAAGAATGGTTGGGTTGCTCTCTCCATTCTCAATGGCAGTGATATTTTTGTCATAGACACGGGGAAAGGGGCTTTAAGGGCTAAAGTGCCTTTGGACAGAGAACAGCAGAGTTCCTATTTTTTATGGATAGAGGCGGTGGACGGAGGGGAGCCTGCCCTTTCATGCGTCACCATGGTCACGGTTTTGCTTCTGGATGTTAACGACAACCCCCCCTTGGTGTTGTTTCCGCAATCTAATTTGTCCTACATGCTTGTATTACCTACAACTCTTCCTGGAACGTCCATAACGGAAGTGTATGCAGTAGATAAAGACACTGGGATGAATGCTGTGATCGCCTACAGCATCGTTGGGAGAAGTGGGCCAAAGCTAGAGTCATTTGAGATTGATCCAAAAACAGGTAACATTACATTGCAGGAAGCACTGATGAAGAATGACTATGGCTTATACAGACTGCTGGTCAAAGTCAGCGACCAGGGCCAGCCAGAGCCTCTGTACTCCGCCGTCATGGTTAACTTATTTGTGAATGAATCTACATCTTTTCTGTTTGACCCCAAAGTACCAGAGCAGTTCAGTTACATGGAAGGTGGTACTGAGCTCTGA

Function

NR:

description
PREDICTED: protocadherin-20-like

GO: NA

KEGG:

id description
K16498 PCDHD1; protocadherin delta 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014622 True 1329 mRNA 0.45 3 20701824 20708613

Neighbor

gene id symbol gene type direction distance location
AMCG00014620 diaph3,LOC102302025,LOC102782473 coding downstream 222761 20476349 ~ 20479063 (-)
AMCG00014621 NA coding downstream 243143 20452184 ~ 20458681 (-)
AMCG00014623 LOC108428456 coding downstream 300791 20359146 ~ 20401033 (-)
AMCG00014616 NA coding downstream 1310972 19386615 ~ 19390852 (-)
AMCG00014614 NA coding downstream 1356154 19342131 ~ 19345670 (-)
AMCG00014625 NA coding upstream 587401 21296014 ~ 21312988 (-)
AMCG00014626 NA coding upstream 912212 21620825 ~ 21627890 (-)
AMCG00014627 pcdh9 coding upstream 1067793 21776406 ~ 21779501 (-)
AMCG00014629 pou4f1 coding upstream 1403569 22112182 ~ 22113631 (-)
AMCG00014628 NA coding upstream 1411127 22119740 ~ 22125366 (-)
G71379 NA non-coding downstream 514856 20186629 ~ 20186968 (-)
G71371 NA non-coding downstream 623815 20073025 ~ 20078009 (-)
G71360 NA non-coding downstream 821593 19792799 ~ 19880231 (-)
G71315 NA non-coding downstream 1445890 19252574 ~ 19255934 (-)
G71292 NA non-coding downstream 1484787 19216213 ~ 19217037 (-)
G71451 NA non-coding upstream 1289309 21997922 ~ 21998188 (-)
G71461 NA non-coding upstream 1512457 22221070 ~ 22221467 (-)
G71496 LOC100846954 non-coding upstream 1598021 22306634 ~ 22306947 (-)
G71512 NA non-coding upstream 1848770 22557383 ~ 22557663 (-)
G71526 NA non-coding upstream 2146736 22855349 ~ 22855619 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 1476594 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 1498257 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 2679729 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 3080673 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 3239534 17446868 ~ 17462290 (-)
AMCG00014630 LOC107672672 other upstream 1517311 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 6576807 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 6627082 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 7621126 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 8680677 29389290 ~ 29398305 (-)

Expression


Co-expression Network