AMCG00014624


Basic Information

Item Value
gene id AMCG00014624
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 20646339 ~ 20667180 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014624
TGTAAAGTGAAGTTAAAAATACGATTTAGTCCGATTGTTTGAAACCCGTATGGGGGGAAAAATGGCTGATTTCAGCTCAGCTCTCTCCAAAGAAGGCTGGTTTCTTTCAGATGAGGGAATAGAAGCCTGCACAAATTCTTCCGAAAAATCTTCCATTCATGAAATAATCAGAGTTGTGCTGAATAGTGATTTGAGACCCCTTGGAAAGAAATTTCTGCCAAGTGAAATCAACAGTGGAAGAGTTGAAAAGCTTGAGGGCCCATGTATTCTTCAACTACAAAAAATCAGAAATGTGGCAGCTCCTAAAGACCATGAAGAATCGCAAGCAGCGCCACGGATGCTAAGGCTGCAAATGACAGATGGCCATACCAACTGTGTGGGGATTGAATTCAAATACTTGTCAAAAATAAGcTTAAACACCCCACCTGGAACAAAAGTAAAACTTCTTGGGACAGTTCTGGTGAAGAATGGATTTTTACTGCTTGATGACAGCAAGATTGTTGTCCTTGGAGGAGAAGTTGATCATATGATTGAAAAATGGGAACTGCAAAGGAGTTTGGCAAAACACAGCAGAACTAATATTGGTGCTGAAGGTGGTCCACCTCCATTTGTCCCCTTTGGTCAGaAATGTGTTACTACAGAACAAGTGGATACCAGAGAACTTGATCAACGAAAGACACTGCAGGTCACCAATGCTATGAAACCTGCTGATGAAAATGatgattttgaaaagcaaaggaTTGCAGCTATTGCAGAAATTGCAAAAAGCAAAGAGATGAGAACATTTGGAGGTGGAGGAAATGCAGGAAGTAATCTCACTACACCTGGCTTGACCAACAAGAATAGGGACTCTTTCCCCAAAAAACGTGAAGAAAAGCCAGCATGGACTGAAAACAGGTCCGACAGTCTTTATCGAGAGTTGGTGGATGAAAGGGCTTTAAGGGACATCATGGAAATGGGTTTTAATAAAGAAGATGCACGGCAGGCCCTTATGgacaataataacaacttgGAAGCTGCACTGAACTTTCTGTTAACAGGCAATAGGCCTTCCAAACCTACTCAGGGACCACCGCCAAGAGGCTTCAACTCTGCTGAAGATTTTgagaacaaaaatgtgttctaTAATGCTGGTCTAAAAAAAAGATCCGGGCCAATCAAGTGTGAAAAAGCTTCAATTGCTTCAGAAACTAACCCTTTAGGGTTTGACAACTGGAAACCAGGAGACCAGTGCCTTGCCCTTTATTGGGAAGATAACAAGTTTTACCGGGCCAGAATCAATGCTGTACATCCTGCAGGAACCACAGCTGTAGTAGTGTTCAGTGATTATGGAAACTATGAAGAAGTGCTTCTCCATAACATCAAACCTGTGCACACTGAGACATGGGCATGA

Function

GO:

id name namespace
GO:0006397 mRNA processing biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0035145 exon-exon junction complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0035064 methylated histone binding molecular_function
GO:0003682 chromatin binding molecular_function
GO:0003713 transcription coactivator activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K18404 TDRD3; tudor domain-containing protein 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014624 True 1393 mRNA 0.42 12 20646339 20667180

Neighbor

gene id symbol gene type direction distance location
AMCG00014619 NA coding upstream 573269 20024521 ~ 20073070 (+)
AMCG00014618 NA coding upstream 624645 19959589 ~ 20021694 (+)
AMCG00014617 NA coding upstream 802297 19843152 ~ 19844042 (+)
AMCG00014605 NA coding upstream 1262020 19380431 ~ 19384319 (+)
AMCG00014611 LOC107384298,LOC104941757 coding upstream 1315421 19319869 ~ 19330918 (+)
AMCG00014632 nfip2,LOC107750051 coding downstream 1580601 22247781 ~ 22264000 (+)
AMCG00014635 NA coding downstream 3715587 24382767 ~ 24385815 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding downstream 4025106 24692286 ~ 24759297 (+)
AMCG00014638 NA coding downstream 4221353 24888533 ~ 24897009 (+)
AMCG00014637 NA coding downstream 4260851 24928031 ~ 24937965 (+)
G71378 NA non-coding upstream 459373 20186614 ~ 20186966 (+)
G71362 NA non-coding upstream 721141 19924902 ~ 19925198 (+)
G71283 tpt1,LOC106582181 non-coding upstream 1423420 19218317 ~ 19222919 (+)
G71237 NA non-coding upstream 1598167 19047958 ~ 19048172 (+)
G71183 NA non-coding upstream 1744178 18901225 ~ 18902161 (+)
G71414 NA non-coding downstream 257388 20924568 ~ 20924837 (+)
G71424 NA non-coding downstream 644410 21311590 ~ 21312022 (+)
G71452 NA non-coding downstream 1452403 22119583 ~ 22122533 (+)
G71459 NA non-coding downstream 1521459 22188639 ~ 22188927 (+)
G71460 NA non-coding downstream 1528439 22195619 ~ 22195875 (+)
G71004 NA other upstream 2371979 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 3159289 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 4177130 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 4507307 16129479 ~ 16139032 (+)
AMCG00014490 rpl31,cnot11,LOC106575914,LOC105022559,LOC106574971,LOC106582250 other upstream 4960440 15675631 ~ 15685899 (+)
G71525 NA other downstream 2188162 22855342 ~ 22855646 (+)
AMCG00014687 NA other downstream 6237697 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 7168323 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 7201523 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 7635193 28302373 ~ 28304073 (+)

Expression


Co-expression Network