AMCG00014627 (pcdh9)


Basic Information

Item Value
gene id AMCG00014627
gene name pcdh9
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 21776406 ~ 21779501 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014627
ATGGACCTAAGGGATTTTTACCTGTTGGCCGCTCTGGTTGCCTGTTTTTGGCTAGATCCTGCGATAGCCCAAGAACTGATCTACCCTATTAGAGAGGAGTTGCAAGAAAATGTGCTTATTGGAAACATACCAAAGGATTTGAATATTTCTCATTTCAATGCTGCCACTGGAACAAGTGCTAGTCTGGTCTACAGACTTGTTTCGAAAGTTGGAGATACCCCTTTAGTCAAAGTTTTAAGCAGTACTGGGGAAATATTTACAACTTCGAACCGAATCGACAGGGAAAGACTTTGTCCTGGCCCTTCTtatgaagaaaatgaatgttCTTTTGAGATTGAGGTGGTCATCCTGCCAAATGACTATTTTAGGCTCATTAAGATTAAAATTATAGTCAAGGACACCAATGATAATGCCCCCATGTTTCCATCTCCTGTTATAAACATTTCCATTCCAGAGAACACACTGATAAATAGCAGATTCCCGATCCCGTCGGCCACTGATCCAGACACAGGCTTTAACAGTGTACAGCACTATGAATTGGTAAATGGGCAAAGTGCCTTTGGCTTAGACATTGTAGAAACACCAGAAGGAGAAAAGTGGCCACAGCTTATCGTGCAGCAAAACCTAGACAGAGAACAGAAAGACACATATGTAATGAAGATAAAAGTAGAGGATGGGGGCACCCCTCAAAAATCCAGCACTGCTATCCTTCAGGTAACAGTCAGTGATGTAAATGACAATAGGCCGGTTTTTAAGGAGAGCCAAATTGAAGTTCATATACCAGAAAACTCTCCTGTGGTTTACCTATCAGAGAAAGATCCCGTTAATACAAAAATTGCCCTCATCACAGTTTCTGATAAGGATACAGATGTCAATGGCAAAGTTCTCTGTTTTATAGAAAATGAAGTCCCCTTCCACCTAAAGGCAGTTTATGATAACCAATATTTGTTAGAGACCGCATTATTGCTAGATTACGAGGGCACCAAAGAATACAGCTTTAAAATCGTGGCCTCTGATTCTGGCAAACCGAGCTTAAATCAGACTGCTTTGGTCCGAGTGAAGCTCGAAGATGAAAACGATAACCCTCCCGTTTTTAGTCAGCCTGTAATTGAGTTTTCAGTCCTGGAAAACAACGTTCGTGGTCTGTACCTCACAACTATCAGTGCCACAGACGAGGACAGTGGGAAGAATGCGGAGATTGTTTACCAGCTTGGACCTAACGCCTCCTTCTTTGACTTGGATCGTAAAACAGGGGTTTTGACAGCATCTCGGGTTTTTGACAGAGAAGAGCAAGAAAGGTTTCTTTTTACAGTCACGGCGAGAGACAATGGGACTCCTCCACTACAGAGCCAGGCAGCTGTGATTGTGACTGTACAGGATGAGAATGACAACAGTCCCAAGTTTACTCATAATCACTTTCAGTTTTTCGTGTCAGAGAACTTGccaaagtacagtacagtgggAGTAATCACTGTAACAGATGCCGATGCCGGGGAGAATGCCGCTGTGACTCTTTCCATTTTAAGTGATAATGAAAACTTCATATTGGATCCTTACTCTGGAGTTATAAAGTCCAATGTTTCCTTTGACCGGGAGCAGCAGAGCTCCTATACATTTGATGTCAGAGCTGTGGACAGCGGTCGACCCCCTTGTTCATCTGCTGCCAAAGTAACAATAAACGTCATAGATGTCAATGATAATACCCCTGTTGTTATTTATCCACCATCAAATACGTCTTTTAAGTTGGTACCTCTCTCTGCTATCCCTGGATCCGTCGTGGCAGAGGTTTTCGCAGTGGATGTTGACACCGGAATGAACGCTGAACTTAAATACACTATTGTAAGTGGCAATAACAAGGGCTTGTTTAGAATTGACCCTGTGACTGGTAATATCACCTTGGAAGAGAAACCACCTGTGACTGAAGTTGGCCTTCATCGCCTAGTGGTCAACATAAGTGATCTGGGTTACCCAAAGTCGTTGCACACTCTGGTTCTGCTGTTTCTCTATGTTAATGACACTGTTGGCAATGCTACCTACATTTATGACCTTATCCGCAAAACCATGGAAACTCCTTTGGATAAAAATATAGGTGGCAGCAGTGAGACTTATCAGAATGGGGACTATCTGACAATTATGATTGCTATTGTGGCAGGGGCTATGGTTGTTATAGTAGTCATATTTGTCACTGTGTTGGTGCGCTGCCGTCACGCCTCCAGGTTCAAAGCTGCTCAAAGAAATAAGCAAGGTGCTGAGTGGATGTCCCCTAATCAGGAGAACaaacagaacaagaaaaagaaaagaaagaaaaggaaatcacCCAAGAATTCTTTGTTAAATTTTGTTACCATCGAGGAAACCAAACCTGATGACCCTGTACATGAACCAATAAATGGTACAATAAGCCTTCCAGCTGAACTGGAAGAGCAAGGTATAGGACGGTTTGACTGGAGCACTGCACCAACAACAACCTTTAAACCTAATAGTCCTGACCTAGCTAGGCACTATAAGTCTGCCTCACCACAGTCTGCTTTTCATCTCAAAGCAGACACTCCAGTGTCAGTAAAAAAACACCATGTGATTCAGGAGCTCCCTTTGGACAACACCTTTGTCGGAGGTTGTGACACCCTTTCGAAGCGATCCTCCACTAGTTCAGACCACTTCAGCGCTTCCGAGTGCAGTTCCCAGGGAGGTTTCAAGACAAAGGGCCCCATGCACACCAGACAGGTAAAGGAGCACTTTTACTGGTCTATCAGTACTGCATATAATTGCCCTATCCACCAGTACTAA

Function

symbol description
pcdh9 Predicted to enable calcium ion binding activity. Predicted to be involved in cell adhesion. Predicted to act upstream of or within homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in nervous system.

NR:

description
PREDICTED: protocadherin-9

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014627 True 2787 mRNA 0.43 2 21776406 21779501

Neighbor

gene id symbol gene type direction distance location
AMCG00014626 NA coding downstream 148516 21620825 ~ 21627890 (-)
AMCG00014625 NA coding downstream 463418 21296014 ~ 21312988 (-)
AMCG00014622 LOC106574996 coding downstream 1067793 20701824 ~ 20708613 (-)
AMCG00014620 diaph3,LOC102302025,LOC102782473 coding downstream 1297343 20476349 ~ 20479063 (-)
AMCG00014621 NA coding downstream 1317725 20452184 ~ 20458681 (-)
AMCG00014629 pou4f1 coding upstream 332681 22112182 ~ 22113631 (-)
AMCG00014628 NA coding upstream 340239 22119740 ~ 22125366 (-)
AMCG00014631 NA coding upstream 540527 22320028 ~ 22332810 (-)
AMCG00014633 NA coding upstream 1824108 23603609 ~ 23604731 (-)
AMCG00014634 NA coding upstream 1985577 23765078 ~ 24324642 (-)
G71379 NA non-coding downstream 1589438 20186629 ~ 20186968 (-)
G71371 NA non-coding downstream 1698397 20073025 ~ 20078009 (-)
G71360 NA non-coding downstream 1896175 19792799 ~ 19880231 (-)
G71315 NA non-coding downstream 2520472 19252574 ~ 19255934 (-)
G71292 NA non-coding downstream 2559369 19216213 ~ 19217037 (-)
G71451 NA non-coding upstream 218421 21997922 ~ 21998188 (-)
G71461 NA non-coding upstream 441569 22221070 ~ 22221467 (-)
G71496 LOC100846954 non-coding upstream 527133 22306634 ~ 22306947 (-)
G71512 NA non-coding upstream 777882 22557383 ~ 22557663 (-)
G71526 NA non-coding upstream 1075848 22855349 ~ 22855619 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 2551176 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 2572839 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 3754311 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 4155255 17589267 ~ 17621151 (-)
AMCG00014555 LOC103136798,LOC106917865,LOC103473267,LOC106919874,LOC103148706,LOC108242195,LOC100692262,LOC101156309 other downstream 4314116 17446868 ~ 17462290 (-)
AMCG00014630 LOC107672672 other upstream 446423 22225924 ~ 22244915 (-)
AMCG00014693 NA other upstream 5505919 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 5556194 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 6550238 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 7609789 29389290 ~ 29398305 (-)

Expression


Co-expression Network