Gene
RNA
| Item | Value |
|---|---|
| gene id | AMCG00014635 |
| gene name | NA |
| gene type | coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 24382767 ~ 24385815 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0031225 | anchored component of membrane | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0043395 | heparan sulfate proteoglycan binding | molecular_function |
| id | description |
|---|---|
| K08111 | GPC5; glypican 5 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| AMCG00014635 | True | 959 | mRNA | 0.47 | 3 | 24382767 | 24385815 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00014632 | nfip2,LOC107750051 | coding | upstream | 2118767 | 22247781 ~ 22264000 (+) |
| AMCG00014624 | NA | coding | upstream | 3715587 | 20646339 ~ 20667180 (+) |
| AMCG00014619 | NA | coding | upstream | 4309697 | 20024521 ~ 20073070 (+) |
| AMCG00014618 | NA | coding | upstream | 4361073 | 19959589 ~ 20021694 (+) |
| AMCG00014617 | NA | coding | upstream | 4538725 | 19843152 ~ 19844042 (+) |
| AMCG00014636 | LOC108414264,LOC103139365,LOC102217784,LOC103461949 | coding | downstream | 306471 | 24692286 ~ 24759297 (+) |
| AMCG00014638 | NA | coding | downstream | 502718 | 24888533 ~ 24897009 (+) |
| AMCG00014637 | NA | coding | downstream | 542216 | 24928031 ~ 24937965 (+) |
| AMCG00014643 | NA | coding | downstream | 701199 | 25087014 ~ 25102638 (+) |
| AMCG00014646 | NA | coding | downstream | 738279 | 25124094 ~ 25126045 (+) |
| G71596 | NA | non-coding | upstream | 49470 | 24332431 ~ 24333297 (+) |
| G71584 | NA | non-coding | upstream | 474118 | 23908385 ~ 23908649 (+) |
| G71581 | NA | non-coding | upstream | 677333 | 23705163 ~ 23705434 (+) |
| G71574 | NA | non-coding | upstream | 785444 | 23597118 ~ 23597323 (+) |
| G71557 | NA | non-coding | upstream | 1017765 | 23364760 ~ 23365002 (+) |
| G71598 | NA | non-coding | downstream | 137830 | 24523645 ~ 24532961 (+) |
| G71662 | NA | non-coding | downstream | 696844 | 25082659 ~ 25082878 (+) |
| G71670 | NA | non-coding | downstream | 723341 | 25109156 ~ 25109378 (+) |
| G71725 | NA | non-coding | downstream | 1147527 | 25533342 ~ 25534154 (+) |
| G71763 | NA | non-coding | downstream | 1319643 | 25705458 ~ 25762742 (+) |
| G71525 | NA | other | upstream | 1527121 | 22855342 ~ 22855646 (+) |
| G71004 | NA | other | upstream | 6108407 | 18271854 ~ 18274360 (+) |
| AMCG00014553 | atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 | other | upstream | 6895717 | 17364798 ~ 17487050 (+) |
| AMCG00014525 | NA | other | upstream | 7913558 | 16465621 ~ 16469209 (+) |
| AMCG00014508 | NA | other | upstream | 8243735 | 16129479 ~ 16139032 (+) |
| AMCG00014687 | NA | other | downstream | 2519062 | 26904877 ~ 26911237 (+) |
| AMCG00014704 | fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 | other | downstream | 3449688 | 27835503 ~ 27841871 (+) |
| AMCG00014703 | ndp,LOC107565935,LOC106586792 | other | downstream | 3482888 | 27868703 ~ 27879800 (+) |
| G72175 | LOC102776245 | other | downstream | 3916558 | 28302373 ~ 28304073 (+) |
| AMCG00014729 | NA | other | downstream | 4411234 | 28797049 ~ 28837910 (+) |
