AMCG00014642


Basic Information

Item Value
gene id AMCG00014642
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25004505 ~ 25073710 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014642
ATGGAGCCCCTGCCGAAAGATGAGAGACCTAATCCGGCGGGTAAAGCTAATCTGTTCTCCAAGACATTCCGCGATCACttactTTGGTTGAACCCTTTGTTTCGAATTGGATACAAGAGAAAACTGGAGGAAGATGACATGTACAAAGTGCTTCCAGAGGACAGGTCAGACAGGCTCGGAGAGGAGCTACAGTGGTATTGGGACCAAGAAGTGCTGCAGGCGAAGAAGGATCTTTGTAAACCTATGCTCACTAAAGCTATAGTGAAATGTTACTGGAAATCCTATTCATTATTAGGGATATTTACTCTCGTAGAGGAGACAATCAAAATAATTCAGCCAGTGTTTTTAGGGAAACTGATCCAATATTTTGAGAGAAAGGACCGAAATGATGCGGACGCTCTAAACCAAGCCTATGGATATGCCACAGGTGTTGCTCTCTCGACGTTTGGATTGGCGCTGATTCACCATCTGTATTTTTACCATGTCCAAAGAGCAGGCATGAAAATCCGAGTTGCTCTGTGCcatatgatttttaaaaaggCCCTTTGCCTCAATAGCAGTGCACTAGGGAAGACTACAACCGGTCAAATAGTAAACCTGTTATCCAATGATGTCATCAGGTTTGACGAGGTGACCATCTTCTTGCACTTTTTGTGGGTGGCTCCTCTGCAGGTCGCTGCTGTGATAGCCCTGCTCTGGGAAGAGATTGGCCCATCTTGCCTGGCTGGGATGGCAGTTCTCATTTTTTTGATGCCTTTACAAACATTTTTCGGTCGTTTGTTCTCCTCTCTGAGGAGTAAAACGGCAGCTTTCACAGACAGCAGAATACGCACAATGAATGAGGTTGTGTCTGGAATTCGTATCATTAAGATGTACGCCTGGGAGAAGCCTTTTGCAGAGCTGGTAAATGACGTCCGAAGGAAAGAGATTTCCAAGGTGATCCTAAGCTCCTACCTCCGTGGCATGAACATGGCTTCATTTTTTGTTGCCAGCAAAATCATCTTGTTCATCACTTTCACCACCTATGTGTTGCTTGGGAACACCATTTCAGCCAGTCGTGTCTTTGTAGCCGTGTCCCTGTACAGTGCCATAAggctcactgtgaccctgttCTTCCCAGCAGCTATTCAGACTGCTTCAGAAGCCATGATCAGCATTCGCAGAATAAAGaATTTTCTTTTGCTGGATGAGGTTTCACTGGATGCCCCCACACTGCAGAACGTGTCCTTCACTGTGAAACCCGGGGAGCTTCTCGCTGTGATCGGACCAGTAGGAGCAGGGAAGTCCTCTCTATTGAGTGCCATTTTGGATGAGCTACCCTCAGACAAAGGGGTCGTTAAAGTCAAGGGGGACCTGACCTACGCCGCCCAGCAGCCCTGGGACATGGATATTATGCCAGATGGTGACATGACTGTGATTGGAGATCGGGGGGCCACACTCAGTGGGGGTCAGAAAGCTCGTGTGAACCTGGCCAGagCGGTTTATCAAGATGCTGATATCTACTTGCTCGATGATCCCCTCAGTGCTGTTGATGCCGAAGTAGGAAGACATTTGTTTGAACAGTGTATATGTGGAATATTACGGAATAAACCCAGAATACTAGTGACCCACCAGCTGCAGTATTTGCAATCCGCAGACCAGATCCTCGTACTGAAAGAGGGGCACATGGTTGCCAGAGGAACttacacagagctgcagaggtCGGGGGTGGATTTCACGTCCCTGCTGAAGAAGGAGGCAGAGGACGACCCGCAGGTGGCtgcagagatggccgccagCAACAGCCGCTCGGTGAGGTGTCGCACCATCTCCCAAACGTCCGTCTGGTCCCAGTCTTCCTCAGTGCAGTCTGGGAAGGATGGGGCCGACCAGCTCCCAGCAGAGCAAGTGCAAACAGTCCTGGCTGAAGAGAGTCGCTCTGAAGGAACCATTGGTGTCAAAGTATATTGGAAGTACTTTAAAGCTGGAGCCAACATCCTGGTCCTTTTGTTCCTCCTCTTACTCAATATTTTAGCACAGGCATCATATGTCCTCCAGGACTGGTGGCTGTCTTATTGGGCGACTGAACAGGAGCGGCTAAATGTTACCGAGAACAATCTGAATGGCCACAATGAAAGTCAGTCGTTGGACCTTGACCTTTATTTAGGAGTTTACGCAGGTTTAACCGTGGGCACAATTCTCTTTGGATTTGTTCGAAGTCTGCTGTTCTTTAAAGTCTTCATTAATGCAGCTCAGTCTCTGCACAACCGGATGTTCCAGTCCATAATCAGAGCCCCAGTGAGATTCTTTGACGTAAATCCCATTGGAAGAATCCTGAACAGGTTCTCCAAGGACATTGGCCATTTGGACAGCCAGCTGCCCTTCACGTTTGTGGACTTCATCCAGACGTTCCTGCAGATTGTGGGCGTGGTGGCCGTGGCTGTGGGGGTGATCCCATGGGTTATAATTCCGGTGGCTCCGCTGTTGATCGTCTTCATATTTCTGCGGCGATATTTCCTGCAGACCTCCAGGGATATTAAGCGCCTGGAATCGACCACTCGGAGTCCCGTCTTTTCccttctgtcctcctctcttcAAGGACTATGGACCATTCGTGCCTTTAAAGCAGAAAATcgatttcagaaaatatttgatGACCATCAGGATCTCCATTCAGAGGCCTGGTTTCTATTCCTGACCACATCCCGGTGGTTTGCTGTGCGACTGGATGGCATTTGTGCAGTTTTTGTTACAATTATTGCCTTTGGATCAATTCTTCTTAAAGACAGCATGCAGGCTGGGGAAGTTGGACTAGCCCTGTCCTATGCCGTCACTCTGATGGGGATGTTTCAGTGGGGCGTCCGTCAAAGTGCTGAAGTTGAAAACCTGATGACGTCGGTGGAGAGAGTCTTGGAATACACTGATCTAGACAGTGAAGCTCCATGGGTAACACAGAAACGGCCACCTCAAGAATGGCCAACCCATGGCCAGGTCACCTTTGAGGGAGTCAATTTTGCCTACAGCACCAATGGACCTGTTGTTCTCAAGAATATGAGAGCTGTTTTTAGAGCGAAAGAAAAGgttGGTATTGTAGGAAGAACTGGCGCTGGGAAAAGTTCCCTAATCTCTGCCCTCTTCCGGCTGACTGAACCCGAAGGAAACATCTTCATTGATGGCGTTTTGACGTCTGAAATTGGGCTGCATGATTTACGTCAGAAGATGTCCATAATTCCTCAGGACCCAGTGCTGTTCACTGGCACCATGAGGAAGAACCTTGACCCTTTTAACCAACACACTGATGAGGACCTGTGGAATGCACTCCAAGAGGTGCAGCTGAAGGGAGTGGTGGAGGAACTGCCATGTAAGATAGAGACGGAGTTGGCCGAAGCAGGGTCCAATTTCAGTGTGGGCCAGAGGCAGCTGGTGTGCCTGGCCAGGGCGATCCTCAGGAAGAACTGTATTCTCATTATTGACGAAGCCACGGCAAATGTGGATCCCAGAACAGATGAGTTGATTCAGAAGACAATCCGAGAGAAGTTTAAGGATTGCACTGTGCTCACGATTGCACATAGACTCAACACTATCATCGACAGTGACCGAATACTGGTTCTGGAGGCAGGAAGAATAAATGAATATGATGAGCCCTATGTTCTTCTGCAAAATAATGACAGCATATTCTATAAGATGGTGCAACAGACGGGCAAGGCCGAGGCTGCAGCCCTGCTCGAGACAGCTAAACAGgaaataattgaataa

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005254 chloride channel activity molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05673 ABCC4; ATP-binding cassette, subfamily C (CFTR/MRP), member 4

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014642 True 3735 mRNA 0.48 32 25004505 25073710

Neighbor

gene id symbol gene type direction distance location
AMCG00014641 sox21 coding downstream 42816 24960946 ~ 24961689 (-)
AMCG00014640 NA coding downstream 76693 24914303 ~ 24927812 (-)
AMCG00014639 NA coding downstream 94223 24900091 ~ 24910282 (-)
AMCG00014634 NA coding downstream 679863 23765078 ~ 24324642 (-)
AMCG00014633 NA coding downstream 1399774 23603609 ~ 23604731 (-)
AMCG00014645 NA coding upstream 56628 25130338 ~ 25143368 (-)
AMCG00014647 NA coding upstream 92236 25165946 ~ 25239586 (-)
AMCG00014650 NA coding upstream 324120 25397830 ~ 25398834 (-)
AMCG00014656 stk24,LOC103147175 coding upstream 635924 25709634 ~ 25729632 (-)
AMCG00014659 NA coding upstream 680138 25753848 ~ 25763919 (-)
G71593 NA non-coding downstream 848357 24155730 ~ 24156148 (-)
G71591 NA non-coding downstream 923758 24080548 ~ 24080747 (-)
G71583 NA non-coding downstream 1298639 23705566 ~ 23705866 (-)
G71582 NA non-coding downstream 1299085 23705199 ~ 23705420 (-)
G71561 LOC107575789 non-coding downstream 1591521 23412616 ~ 23412984 (-)
G71723 NA non-coding upstream 414516 25488226 ~ 25490651 (-)
G71726 rap2a,LOC106512668,LOC106582448,LOC100695037,LOC103391592 non-coding upstream 434887 25508597 ~ 25508870 (-)
G71727 NA non-coding upstream 457228 25530938 ~ 25533180 (-)
G71740 ipo5,kpnb3,LOC107730386,LOC107555240 non-coding upstream 517108 25590818 ~ 25591551 (-)
G71835 NA non-coding upstream 953825 26027535 ~ 26028500 (-)
AMCG00014630 LOC107672672 other downstream 2759590 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 5779275 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 5800938 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 6982410 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 7383354 17589267 ~ 17621151 (-)
AMCG00014693 NA other upstream 2211710 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 2261985 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 3256029 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 4315580 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 5767813 30841523 ~ 30846800 (-)

Expression


Co-expression Network