AMCG00014643


Basic Information

Item Value
gene id AMCG00014643
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25087014 ~ 25102638 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014643
atgTCAGTATTGCAGATTTTGGCATTCCTAGGGTGCATTGCTGGATTGGGATCTAATCTTGGTGCCACAGTTTCAAATGAATGGAAAATCACTAGCAGGGCTTCCTCTGTTATAACGGCAACATGGGTTTTTCAAGGGCTTTGGATGAGCTGTGCAGGTAACGCCATCGGAGCCGTCCACTGCAGAGCACACCATACCATCTTCCAGCTGGAAATTTCAGGCTGGATCCTTGTTTCCTCCACTTTGGCCACTGACTACTGGAAGGTGTCTTCAATTGATGGGACAGTCATCACCACAGCCACGTTCTGGTCCAGCCTCTGGAAGACCTGTGTGACTGACTCCACTGGCGTCTACAACTGCAAGGATTTCCCATCCATGTTGGCACTGGATGGCTATATCCAAGTGTGCAGAGGTCTCATGATTGCATCTGTCTGCTTGGGTTTTTTTGGAGTGATTCTTGCAATGATTGGTATGAAATGTACCAAGATTGGAGGAACCGATAAGACCAAATCTAGAATTGCTGGTTTGGCAGGTGGAACTTTCATAATTGCTGGTCTCTCATCTTTAACTGCCTGTTCTCTGTATGCGCACAGAATCACATCAGAATTTTTTGACCCTACATATGTAGCACAAAAATATGAATTGGGCGCAGCACTGTTTATTGGCTGGGCAGGTTCTGTACTTTTAATTCTTGGAGGTGTGGGCTTCTGCTTCTCATTTGCAGAAGAGGGGGAGCAAAAAAGGAGAGCATACACTTACAGTGGTGCAGCTTCATTCATTTCTTCTCGCACTAAGGTCCACAGCAGACCTGGAGATATTAAAACTGGTGGGGAAAATGGCCAATCTTCAAAGCAGTTTGGAAAAAACGCCTACGTGTGACACAATCATTGAAGggacttatttttttcacagtatTGTTCATCCATAGGTGTGGACCTTTGCAACACAAACTAAAATTGAATCCTTGATTGGGCAGAACAGTTCACAACGAATCATTGTGCCTGTATTCACACCACAGTATTGAAGGATGATCCCTTTCCtttgtgtgtattaaaataagtgcTGGAAGGGTGCGATTAGTCTGTTGGCCTGAAAATACCTACCCTTAAAGTCCTACCATTACCCTAGCTGCCATTCATAGTAGTGGTCTTCAATTCAGTGGGTCTTCATGTGAAACATCATGAGTTTGAAGTTAATTAATGTGTAGTTGTTCAATAAtttcatttgtaataataagaagaaaggaaaaacaagagaaaacaaggaaaacaagttttttttgtaattgtctgCTGTCCCTTTCCAACAAATATACGTTGAAATGGTCTTCAGTAAAGAGAATTGCCTTTTTTTGCTGGAAATTCTATCGTTCATTTTGGCTCCGTACACAACCTCTAGATCACCTTGATGTTACAAATTAACGTATTTCCTGCACCATTAAACACTAGTCTGCTAAAAAAAGGTATTGAAATTGATGTCAGGTTCTCTAGATAACCCAAGGTCCCAAGTGCAGTGACAGAGCATTGTACATGTGAGACCCACTCACCTATAGTGTCACCTAGATTTCTAATCACACTTTCTATCTGCCAGGTTGTAAAAGCAAAGTaagattattttagtttagaaCAGCAGCacctgaaatgcatttcatggaGCGCTAAATCCCAAATAGATCATTTTAATGCTGCATCTGAAGGCCTTGGGAAAGATGGTTCAGGTTAACTATTGAGAAaatccaaattataatttagacaGGACACAAAGTTAAGCAAGTTACAGTGCCATGAGATCTTACATGACCCCAAGCAATAAGGACCTTAGTGTACCATCTCATCCAAAAAGCATAGTCACCATCTGGGGTATTGGTTTGGGATTTctgatgtatttcaaaataaccaAATTAAGCCATTTAGGAATGATTAGAATCCTCAGGTAATACAGATAAAGTTAAAAGGTGCAGGACATTTTAAGGAAagtcaaaaaaggaaaaagaaacatttttaggaaaatacaaaatgttgtaaTCTCAAATTAAGGAACAATCAATGTAGTTTCAGAAGACTCAATTTCATGGCAAAACTTTAACTATGATAAACAACTTGAGATGTTCCATTGTatgatttataaaaacacaatgccTAAGCTTACGTTTTCCCAAAAACCCTTTTTCAGATATATTGAGTAATATCAACATTCAGTGCCAAGCTTGTACAAAGAAAATTCTGTACTGCTTTGCAGTCGTGCCTTTGACCTAATGCAGTGACTCAGCCATTCCCTCAACTGGGATCAAGAAGTGGTTTAGAATCGTTGTGTTACAGCAGTGGAGGTTTTCTGTTGTTGCACAACCttgacatttttcaatttaattatttatttttaaataacattttatccTGGAGAATTATAAACTGATAAGCCTAGTGCCCTACATCATTAGTTTTTTGTAAGATTAAATTGGACATAATACATACTCTATCTGgtataattaaaatttaataaGTAATGCTCAGCATTATGTCCACCTTCCTTGTAACATTAAGAGCATGTTAATGGGAATTAAATCtatgcagaatatattattttcaaatatattactagaaatttaaaatattttataatatgttatataaatgtatataggtCATATTgttgataaatatattataatatactgGAATACAGTGGAATATACTTTATAATAGGTCACTCATAAACTATATAGGTCACGCTTTGACCCACCTgataattacaaattacaaatctggTAATGATGTTAGGTTCCATCTGGCATAGAGGCAATAAGCCTATAGCCAGCAAAAGATCTGGCATCAATACCTGGCttgtaaattcaaaataaaggtGGGAAATTGTCTTTGAAAATATGATATATCTGGCCAAATTCAAGTtgtatattcagaaatatattatgtacattttcaaaacaaacattctaaaacatttatgtattgTCTATTCTTACTGgcaaattgaaaacatatttaaattaatgtttctgttttccttttggtATTCACAACTATAGGTAAGCATTGGTTTGCAGAGGAGTAAAAATCTGTTCACCAGTCCAAAATCTGCTTTTATGATATTAAATGCTTGTACATCTTTTCCAGACCTGTTTGTTAAATGTTAGCATTGAAGTGTAGACAATAATCAACAACTTTCACAAATCACTATGTTGAAGCAGtgtatgttttctgaaaatgaccATAGATTCCATCAAAACAGACAGTGTCAACATCAATGTGTAATTGCTCTTCGGACAGGACAAGAGGTTTCTTTTAAAAGATCATCAATTTGCCTTTATCAGAATTGCATCTACTGTATTTAAACTATAGACATGTAGCATGGTTGTATACAGTATGTTCTACCTGTGAGTTCATGTTCTCAACAGGTTCTACAATAAGCAGGGAAGGAGTTATAGTCAGGGCACTCTCAATATAGTTATGAGCTAAACTTGAAAGTAATTACAATACACTTATAAGGTTAAATTACATGTTATTGAGGAatatatgcaaaaaatataaatatacagtataaacagtgaaatgtatgtgtgttgatacatttattgactacactaaaatgttttatatacctCATTCAAAGCTGTAAtgttaatacaatgtaaatttgcatgataataaaatacaaactataat

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K06087 CLDN; claudin

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014643 True 3680 mRNA 0.36 6 25087014 25102638

Neighbor

gene id symbol gene type direction distance location
AMCG00014637 NA coding upstream 149049 24928031 ~ 24937965 (+)
AMCG00014638 NA coding upstream 190005 24888533 ~ 24897009 (+)
AMCG00014636 LOC108414264,LOC103139365,LOC102217784,LOC103461949 coding upstream 327717 24692286 ~ 24759297 (+)
AMCG00014635 NA coding upstream 701199 24382767 ~ 24385815 (+)
AMCG00014632 nfip2,LOC107750051 coding upstream 2823014 22247781 ~ 22264000 (+)
AMCG00014646 NA coding downstream 21456 25124094 ~ 25126045 (+)
AMCG00014644 dnajc3 coding downstream 47165 25149803 ~ 25163635 (+)
AMCG00014648 hs6st3,LOC105898056,LOC102202054,LOC101476457,LOC100690379 coding downstream 142775 25245413 ~ 25245961 (+)
AMCG00014649 LOC105024749,LOC106586266,LOC106582445 coding downstream 270748 25373386 ~ 25374072 (+)
AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding downstream 377153 25479791 ~ 25505003 (+)
G71662 NA non-coding upstream 4136 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 554053 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 753717 24332431 ~ 24333297 (+)
G71584 NA non-coding upstream 1178365 23908385 ~ 23908649 (+)
G71581 NA non-coding upstream 1381580 23705163 ~ 23705434 (+)
G71670 NA non-coding downstream 6518 25109156 ~ 25109378 (+)
G71725 NA non-coding downstream 430704 25533342 ~ 25534154 (+)
G71763 NA non-coding downstream 602820 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 643165 25745803 ~ 25748408 (+)
G71784 NA non-coding downstream 667571 25770209 ~ 25770489 (+)
G71525 NA other upstream 2231368 22855342 ~ 22855646 (+)
G71004 NA other upstream 6812654 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 7599964 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 8617805 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 8947982 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1802239 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2732865 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2766065 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 3199735 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3694411 28797049 ~ 28837910 (+)

Expression


Co-expression Network