AMCG00014645


Basic Information

Item Value
gene id AMCG00014645
gene name NA
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25130338 ~ 25143368 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014645
ATGGGAATCCGTTTATTGTTCTTGCAGCCTTTTTACAACAACGTATACTACCCATTCCCCTCAGAGACCCCTGGGACCTCAGCAGGGATTCCTTCTTTACTGAACTCTCCTCAGAGCCTGCGCTCCTGCAGCCTCCCCCAGCACTCCTCCGGGGCCTCGGGGCCTGCGATCACAGGCATGACCGAGGCTCACTTCCCTGCCTTTAAATTCCGCGCCCGGCGGGAGAGCGTGGACTGGCGCCGGATCAGTGCCATTGATGTGGACCGGGTGGCCAGCGAGCTGGACTTCCACACCCTGCAGGAGAATATCATGGGCATCACGTTCTGCAGCGTTGACAACGAGCGCTGCCCTTACTGCCAGAACCCGGTGGAGCCTGTGCTGCTGAAGCTCTTCAGATTGCTGCAGCTCACGGTGGAATACCTGCTCCACTCTCAGGAATATCTCACCAGCGGCGTGCATGCAGTGGAGGGGAAGCTGCAGGCCTCGGTGCAGGAGAAAGAACAGATCCAGAAGGAAGCGACCAAGCAGGCGGAGGAGATTAAATTGCTGAAGGAGGAGCTGAAACGGAGGAAGAAGATCATTACCTCCCAGCAGACTATGATCAATGCTGGTGTGAGTAATTACCATAAGTGTCAGCACTGTGATAAAGCGTTCATGAATTATTCCTTTCTGCAAAGCCATATACAGCGTCGCCATCCAGAAGAGTATGATATTGTCatatctgaaaaacagaaaaagctaCAATCTGTTAAATTCCAGGAAGAGATCAACAAACTCAAAGAACAGTTAAATCTGACAAGATCCCAGCTGGAAAATGAACACCAAGCATATATGGTCAAGCTTTCACAGGAACAACAGCATCAGAGGACAAAGGAAGAAGAAACTGTAAAGCGCTTTGAGAAGtggaaggaggaagagaagcATAAACTGGATGGGGAGATTGAGAAGATGAGAGACATGTTCATTAGGGAATTCAAGGAATTATCTGCTAAAAATGCTGTTCTAGAAAATCAACTTTCGGAGATGAAGATGTCCAATTTACAGCTGAAGTCTAACGTCGGAGCTCTACAAGAAGTCAAGGCCCATGAgactgaagaagaagaacacAGAAACTATCAAGAACTGCAGAATCTTAAGGAGAGGTTTAACAAGCAGGAAGCAAGGTGGACCACTAGGGTGCAGAAAATGCGTGATGAATacgagaaggaaaaaaaacagCTTCAGGCTGACCTTCATCAGATGCGATCCTCCCTGGCAGAGGAGCAGAAGCTCAGCAGCAGTTTCTACAGGAAAAAGATGGAAGAACTGGGCCAGAAGGTGCAGGAACAGAACAAGCTGATTACCACTCAGAAGGAGCAGGCAACCTCTGTACATATACTGGATCCTATAGAGGAGCTTTCAGAGGAGGATAAAGaTTCAGCAAGTATTTCTGTGAAGGATGATAAGCAGCTACTTATAAGTGCCTTAAAGAAAAACCCATCATTAACGAAGGAATTACGCCCAATCTTGGAACAGACACTTGTAGAGAAATTGGAATATCTAGGTGTGAAACCAGGAGTTAGTGGCCTTTCCACTGATTACTACAATAAGATAATGTGCCAAATGtcttcacaaaaacagaaatctgcAAAAAAGTTTCAAGATTTTCACAGTGTCAGAGAAACGCTTATCAATAAAGTGGACTTGAAGGTTCAGGAAAAGCGCGCTGCATCAGACTCTGCTGTGCCGAAAAAGAGACCTGaaaatcaaAAGAGGAACAGATCGTGGAGTTTGCCTTCTGCCCGGGTGACACACGTAGTGTCAAAAGCAGGTCTGAAAGGCCAGCCTCCACAGCCGGCCCCTCGGACTAAGACCAACACAGTCCCTAAGACCTCTACACCAAGaACTCCTCCCTTTAGCTCAGATGAAGAATCAGAAGAAGAGTTTCTTCAGAAACCACGTCCAGAGCCCAAAGCTGTGCTCCCAAAAAACCCTCCTGTCGGCTTTACTGAAACAGTGGTCAAGAATCTGGAGAGCGAATCTGACTGGACAGATGACAGTGAGATTGAAGAGCTTGAGCCACAGCCACTGCATCGTCATAAAGACCAGAAAGAAGCTGCTGGAAAACCTGTTCAGAgtgcTGCTGTGAAAGATGTTAAACAACCTGGAACACAAAGAGATCAGAAGAAACTTGCTGGAGCGGTTAAGGTTTTGCCAGAGCAAAATGACGTGTTGCAAAAACTGAAGttttcagaTGCAGATGACGATGACTGGGATATTTCTTCATTGGAAGAAGATAAACCAACAACCGTAAAACTAGACAAATGCCAGCCTGTTTTCAGTGTCAGGAAGAGCTTTGAGTCCAATTCTTCCTATACGAGTGTTTGGGGCACCTCAACTGGGCGAGGACATAAAGGAGGCTTTCATGAAGGGGACACTGTCAGCACTCTTAAAAGCAGCCTCGTGTCCGTCAGTGACTGGAGTGAGTCTTCAGATAATTAA

Function

GO:

id name namespace
GO:0006607 NLS-bearing protein import into nucleus biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:2000223 regulation of BMP signaling pathway involved in heart jogging biological_process
GO:0035082 axoneme assembly biological_process
GO:0001568 blood vessel development biological_process
GO:0008589 regulation of smoothened signaling pathway biological_process
GO:0021984 adenohypophysis development biological_process
GO:0001947 heart looping biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K16470 DZIP1; zinc finger protein DZIP1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014645 True 2481 mRNA 0.47 15 25130338 25143368

Neighbor

gene id symbol gene type direction distance location
AMCG00014642 NA coding downstream 56628 25004505 ~ 25073710 (-)
AMCG00014641 sox21 coding downstream 168649 24960946 ~ 24961689 (-)
AMCG00014640 NA coding downstream 202526 24914303 ~ 24927812 (-)
AMCG00014639 NA coding downstream 220056 24900091 ~ 24910282 (-)
AMCG00014634 NA coding downstream 805696 23765078 ~ 24324642 (-)
AMCG00014647 NA coding upstream 22578 25165946 ~ 25239586 (-)
AMCG00014650 NA coding upstream 254462 25397830 ~ 25398834 (-)
AMCG00014656 stk24,LOC103147175 coding upstream 566266 25709634 ~ 25729632 (-)
AMCG00014659 NA coding upstream 610480 25753848 ~ 25763919 (-)
AMCG00014658 dock9,LOC106586262 coding upstream 631601 25774969 ~ 25851971 (-)
G71593 NA non-coding downstream 974190 24155730 ~ 24156148 (-)
G71591 NA non-coding downstream 1049591 24080548 ~ 24080747 (-)
G71583 NA non-coding downstream 1424472 23705566 ~ 23705866 (-)
G71582 NA non-coding downstream 1424918 23705199 ~ 23705420 (-)
G71561 LOC107575789 non-coding downstream 1717354 23412616 ~ 23412984 (-)
G71723 NA non-coding upstream 344858 25488226 ~ 25490651 (-)
G71726 rap2a,LOC106512668,LOC106582448,LOC100695037,LOC103391592 non-coding upstream 365229 25508597 ~ 25508870 (-)
G71727 NA non-coding upstream 387570 25530938 ~ 25533180 (-)
G71740 ipo5,kpnb3,LOC107730386,LOC107555240 non-coding upstream 447450 25590818 ~ 25591551 (-)
G71835 NA non-coding upstream 884167 26027535 ~ 26028500 (-)
AMCG00014630 LOC107672672 other downstream 2885423 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 5905108 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 5926771 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 7108243 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 7509187 17589267 ~ 17621151 (-)
AMCG00014693 NA other upstream 2142052 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 2192327 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 3186371 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 4245922 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 5698155 30841523 ~ 30846800 (-)

Expression


Co-expression Network