AMCG00014655 (LOC107559785)


Basic Information

Item Value
gene id AMCG00014655
gene name LOC107559785
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 25660345 ~ 25698928 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014655
ATGCAAAGGGCCCCAGGAAAGATCCTGTTTGACCTCGTGTGCACCCACCTGAATCTCATCGAGGGAGACTATTTTGGCCTCGAATACCAAGACCACCGGAAAATGACGGTGTGGCTGGACCTACTAAAACCCATCATGAAGCAACTCAGAAGACCCAAGCACACAGTCCTGAGATTTGTGGTGAAGTTCTTCCCCCCAGACCATGCCCAGCTGCTGGAGGAATTAACAAGGTACCTCTTTGCCTTGCAAATTAAGCAGGATCTGGCTGCAGGTCGACTAACTTGCAATGATAGCAGTGCTGCCCTACTGGTGTCCCACATTGTTCAGTCCGAGATCGGAGATTTTGATGAAGCCCAGAACCGGCAGCACCTCCGGAAAAACAAGTACATTCCAGATCAAGACATACTGGTGGACAAGATCAATGAGTTTCATCGAAAGCACGTTGGGCAGACACCGGCAGAGTCCGACTACCAGCTGCTGGAGATTGCGCGGCGGCTGGAGATGTATGGCATCAGGCTTCACCCAGCCAAGGACCGAGAAGGAACTAAGCTCAACCTTTCTGTggcccacacaggaatcctggTTTTTCAGCAAAGCAACTACCAGGACACCCTTGAGTTTCTGATGGGCAGCCGTGACTGCTGCAAGGTCTTCTGGAAGATCTGTGTTGAGTACCATGCCTTCTTCAGGCTGTTTGAAGAGCCCAAGCCCAAACCCAAGCCAGTCCTCTTCAGCAGAGGGTCCTCTTTCAGATTCAGtGGCCGGACACAGAAACAGGTGATTGATTACGTCCGAGACTCGGAATTCAAGAAGATTCCCTTTGAGAGGAAACACAGTAAGATCCAGTCCAACTTGAGCCTGTCTCCTCAGCCCTCAGAGCGCCGTCCCGAAGTGCCAAAGCAACCCGACTCCCCAGCCAAGACATCGAGGCTGCCCAAGGACACAGGGTTTGTGGAGGACACGGCAGGACAGCAGCCGCACCACACCCCCTCATCCCGGAGGAGCCCCCGTGAGGGCCAGAGCGCCGAGCAGGCAGAGGAGGAACCAGATGCAGTCGGCCAGGGGAAAGGCCAGCAGCTGTCGGGCAAACGGCAATCGGAGCATCTGAGCACAGGTCCAGCATCCCGGGCTGCTAGGGGCAGCAGCAACTCCATACCTTACATAGACTGCAGTGACATAGATAGCGAGTATGACGTGGCGAAGGGCCGTGTCACCAGGTCCCAGTCCCAAACAAATGACAACTATGAGGATGAACCGGTGGTCCGCAGTAGTGGCGGTAACGGTGCCAACCCTCGTGAATGTCAGGAGAATCGCAGCAGAGGCAGATATAGGGATCCCCCTACCTTTTCCAGGCCTTCACTCAATTTAACTGAAGAGTTTATTGACGATGAGCCCGACGACTTTTCATTTTACGGCAGCGGGACCCCACGCATGCCGAGACACAGCACTCTAGTCGATGAGATTTTCAGGGGCTCGGAAAACCGTAGCCCCCTGCCTGCTCCCCACACTCCTGGGAGCAAGACTTCCAGCCCGCACATGAGCAGTTTTAATAGGACCGGCTCTCCGAGTTATCTAGAGCAAAACGGTCACGGCTCCAGGCCTTCACTTCGGGAAGATGGCCCACTTTTTAGTTCGAGGCCCAGCCCCCGGGAGGAATGCCAAACGTATGGTAACTGCTCTCCCATTGTAGGTAGGCCACACCTGCAAAAAATGCAGAACGTGAGAAACCGCTCCGACACAGACCCTTTCATCCTCAGTCAGGTCACCTCCACTCCCACAAACGACCACAGGTCGGGGAGCGTTTCCAAAGCAGAGCGCATGGCTGCTTTGGAAAGGCGGATGATTGGCAATGGCCTGTCTTCCCCTGGCCTGCCCAAGATGAGCCCTGCCATGCAGAAGCTGTTTAGCGGCGGCGCAGCGGATCACATGGGAGCCGTTCAAATGATCGACGGCTCGACCAGCAGTGGCACGGAATCCAGCGACTCGGAGTCCGAAATACTCAACCCTTACAACCACCCACTCATGTATGGTAACCCCATTGCCGTGAACTCGTCGCCCATGCCTAGAAACAAGTATTCCTTCGGCAGCCTGCAGTTAGATGAGGAGATAGAGGAAGATGGGTGTTTTAACCTGAGTGATGAAGATGgCTCCATGACTAACAGCCCCCGGCTCTCGGAGACCTCGATGAACTCCCAGGGGACGCTGGCGACTCAGAAGCAGATCCTGTCCCCCGGCCTGAGCCCCGACGCCCGGCAGCCTTCCCCCCTCACCAGTCCCCTGCTGAACGACGCAGGCTGTGTGCGCACCGACGATGAGGATGAAGTCAGGAGGAAGAGGTTCCCCACAGACAAGGCTTATTTCATTGCCAAGGAACTGCTGACTACGGAGAGGACGTATTTGAAGGACCTCGAGGTGATAACCATGTCATTCCAAAACGCCATAGGTAAAGATGAGGCGATGCCCGAATCTCTCAGGAATGTTATCTTCTCCAACTTTGACCCTCTCTATAAATTTCACACCGGCTTCCTGAAAGAAGTGGAACAGAGACTTGCTCTCTGggAGGGCCGCTCAAATGCACACATCAAAGGCGATTACCAAAGGATCGGGGATGTAATGCTGAAGAACATACAGGGTATAAAGCAGCTGACGTCCCACCTGCAGAAACACTCGGAGgtgctgctggagctggagagGGCCAGCCGGGCCTCGCGCAAGCTCGAGGTCCTGTGCCGGGACTTTGAGATGCAGAAGGTGTGCTACCTCCCCCTCAACATCTTCTTCCTGCGGCCCCTACACCGCCTCATGCACTACAAGCAGATCCTGGAGCGCCTCTGCAAAcactacccccccacccacgTGGACTTCAGAGACTCCAGAGCTGCTCTGGCGGATATTTCCGAAATGGCAGCGCAGCTCCACGGAACCATGATAAAGATGGAGAATTTCCAAAAGCTGCTTGAACTGAAGAAAGACTTAATTGGCATAGAGAATCTTGTGATTCCAGGACGGGAATTCATCAGGTTAGGCTGTCTTAGCAAGCTTTCGGGAAAAGGCCTGCAGCAGCGAATGTTTTTCTTGATCAGAGACAGCGAGGAAGAGTGGGGCGTGCCTCACTCCTTCACACTGTTCGGACAGCGGCAGACTGTGGTGGTCGCAGCGAGTTGTGCATCGGAAATGGAGAAGTGGATAGACGATATCAAGATGGCCATCGACCTGGCTGAGAAATGCAATGGGCCTTCCTCAGACTTGCTGGCCACTAGCCCTCCCGAAAACAAATCTCCAGAGGACTCGACTCTAGACCAGGAATCTGAGGATGATCTCAGTGCCTCCCGTACCTCCCTAGAGAGACAGGCCCCTCACCGTGGTAACACCACGGTTCATGTCTGCTGGCACAGAAACACCAGCGTTTCAATGATCGACTTTAGCATTGCTGTGGAGGATGACTATCCTCTGGCCAGTCTGCCACTCCTTGGGTACTCAGTCACCATTCCCTCAGGGTCTGAAAACATCCACAAGGATTACGTCTTCAAGCTGCACTTCAAATCCCACGTGTACTATTTCAGATCGGAGAGCGAGTACACATTTGAAAGGTGGATGGAAGTTATCCGGAGTGCCACAAGCTCAGCCAGCCGCGCTCGGATTTTAAACCGTAAGGATTCTCACCCTTACTGATCCAAAGACTCCCCCAACTCCAGGCCCACTGGATTTCAACTGCCCCCCATGCTGTGCCCATGCATATCCACACTGCCCGTCTGAGACCGCTGCAGCCTCCTGACAGCCAGCCATGAGCTCGATTACACGCCTCTCCTGCCTGCTTCTTTACTAGGGTATGATCTcggacagattttattttttttttcctctccagaCTCTTGTTTCTAAACACACGTGTAACAACACTTGCACCTCGAACTGTGAGTGTAACCTGCACAATTCATATCCTTCTGATGCTTTAAGGGTACCTCTCTGACttagagacaaaaaaaaaaaaaaaaaagaccacagTTTTAACACTGAGGCGTTAACTCCATTTTTAGTGggacttcatttttttttttttttacaagttttaaaaagtcTGTGAACCATTTGGTGACATGATTTTACACGTTGGTTTGTGTTTTCAAGATGTATGCCTATCAAAAGAGATGGgttcggtttgttttttaactaaaGTTTTCTTGCAAATTTCTTTGCTATtccaaaaagtttttttttttttttttaggaaaaagGACAAAGGCTGATTCAATTTTTGCAGCCTGAGTGCCAAACTGATTTATACCAATTTTCTCTGCCATTGTCTTTCAACCTTTATATATGTGATTTTAATAAGTCTTTGGTGATAAACATGTTTCTAACAGTGTCCATTTTAGAAAATCAGACTAAACCGGcacctttaaaaatgtttttaaatgtaattctataTGTCCCCTAGTAACTATGTATGACTTGATGAATGATCATGTTCACATTAACCTTAAGATgtcaatatatgtattaaaaaaaggtttttataATGATTACTCTAGGGGTAGTTCTCCATTTAATGAATAAGTCAAGGTAGACATTGTCACTTAAGGCGACGGAAATGGCTTCTTCATGTaactgctgtgtttctgtgaccTATACTGACTACAGTATATTAGCATCCagagtttattttgtatgatcaaattacaatttgtgaaaaactgaCATTGTTTTTATGAAGAATCTGACTTATATTAAAACTATATCTATGGtgataaaacatgtaattcaGATGAATATTCCCAAGTGGATTGAagctttaaatgaaaaatactaaatatacatttaaaaataaatctatatcaAACAATCCACTCCATGAATAGCAGGCCCTCTCACATGTCACAGCTGGCTTTCaactataataaaaacacatgaaactgaaataaaatgcatatctatggttttcttaaaaaatgtcatgacttttatataaaaaaagagcaTTTTAATCACATGCCATGGTAGATTAAGGGTTTTGCTCCAGCTGGGAGCTGCTGCCTCCCTCCAGTAGCAGAGTGCTCTATGGAAGTGAaagcaataaacacattttatg

Function

NR:

description
PREDICTED: FERM, RhoGEF and pleckstrin domain-containing protein 1-like

GO: NA

KEGG:

id description
K17477 FARP1; FERM, RhoGEF and pleckstrin domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014655 True 5089 mRNA 0.49 23 25660345 25698928

Neighbor

gene id symbol gene type direction distance location
AMCG00014657 NA coding upstream 29491 25608988 ~ 25630854 (+)
AMCG00014654 kpnb3,ipo5,LOC107677849 coding upstream 67778 25575240 ~ 25592567 (+)
AMCG00014652 NA coding upstream 86337 25565157 ~ 25574008 (+)
AMCG00014653 rap2a,LOC101166017,LOC106512668,LOC105907999,LOC105933629,LOC100695037,LOC103391592,LOC106582448 coding upstream 129496 25522226 ~ 25530849 (+)
AMCG00014651 mbnl2,LOC107677847,LOC107653675,LOC107555253,LOC107559795 coding upstream 155342 25479791 ~ 25505003 (+)
AMCG00014661 gpr18,LOC107740919,LOC107681324,LOC107600424,LOC107748622,LOC107668869 coding downstream 235553 25934481 ~ 25941543 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding downstream 337505 26036433 ~ 26052543 (+)
AMCG00014665 NA coding downstream 386931 26085859 ~ 26123768 (+)
AMCG00014664 zic2,LOC106586042 coding downstream 469533 26168461 ~ 26172474 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding downstream 504955 26203883 ~ 26244458 (+)
G71725 NA non-coding upstream 126191 25533342 ~ 25534154 (+)
G71670 NA non-coding upstream 550967 25109156 ~ 25109378 (+)
G71662 NA non-coding upstream 577467 25082659 ~ 25082878 (+)
G71598 NA non-coding upstream 1127384 24523645 ~ 24532961 (+)
G71596 NA non-coding upstream 1327048 24332431 ~ 24333297 (+)
G71763 NA non-coding downstream 6530 25705458 ~ 25762742 (+)
G71772 NA non-coding downstream 46875 25745803 ~ 25748408 (+)
G71784 NA non-coding downstream 71281 25770209 ~ 25770489 (+)
G71817 NA non-coding downstream 253305 25952233 ~ 25959702 (+)
G71826 NA non-coding downstream 311871 26010799 ~ 26011000 (+)
G71525 NA other upstream 2804699 22855342 ~ 22855646 (+)
G71004 NA other upstream 7385985 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8173295 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9191136 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 9521313 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 1205949 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 2136575 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 2169775 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 2603445 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 3098121 28797049 ~ 28837910 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_000050 farp1 coding NC_007112.7 CM002885.2 2301958 ~ 2444210 (+)
grasscarp (Ctenopharyngodon idella) CI01000299_00419297_00444862 NA coding CI01000299 null 419297 ~ 445888 (+)