AMCG00014669 (LOC107748618)


Basic Information

Item Value
gene id AMCG00014669
gene name LOC107748618
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26373224 ~ 26389223 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014669
ATGTCCTGGAAAGGCAAGCCAAGAGCGACTAATCTGGAGAGACTGGAGTCGGTTATGAGCCAATTTTCTGGGAGTTTAGATCACTATGACCTGCAGGATGACACGGATGAGCTAGATTTAAGCTGGCATACTGATCAGTGTGATGGAAAACCTTCAGAGTCCAGAAAAATTCCATTCCATGCAATATACAGCCTTCTGCCTTTCAAAGCTCTGGAATGTCGAATTTTCCTTGAGCAAGTGCCCATCTTTGTCCGAGTGACAGACGTAGAAAGGTTTACTTCAACTACAAGGGTCCTGAATCCCAACCTCTACACTATCGAGCTCAGCCATGGGGAGTTCACATGGACAATCAAACGTCGTTTCAAGCATTTCCAGGCCCTGCATCAGGAGCTCCTGAAATTCAAGGCCCTGCTAAAAATCCCACTGCCAACCAGAACTCACACGGTTCGGAGAAGATCCTTCAAAGGCCTAAAACGATTTCAAGGAGGACATATCCCCACTCTGCCACGGAGACCAGATGCCATGGTGAAAGAGGAACAGCTGACCAGTAGAAAGcTCGAATTCTTGGAAGTGAGTCAAATATCCTTTATTCAGGATCTTGGTCCGAAGGGAAtTGAGGGGCTTATCTTGAAGAAGTCAGGGGGGAATACCTTCCCTGTCTGTTACTGGTGTGGCTCCAACAGTGTTTGCTACAGGTGGTCAAAGAGATGGTTGGTGGTAAAAGACTCCTTTGTTCTGTATATGAGGCCTGAGGATGGCCAAGTTGGGTCTGTCATTCTGTATGATAAGGGATTCAGCATCAAAACAGGGACCAAAGAAACAGGAATTAAACATGGAGTAACAATTGAGAACCTTTCAAGGACACTTACCATCAAATGCTCCACATACAGACAGGCACGGTGGTGGGGGCAGTCCATTCACGAGTTCGCACAGCAGTACGGACAGGACTTCATGAAAGAAAACCGCCACGGGTCGTTTGCTCCTGTCCAGGAAAACACATTGACCAAATGGTTTGTCAATGCAGCTGGCTACTTTGACACTATTGCTGATGCTTTAGAAGCTGCCAAGGAGGAGATATTCATCACCGGCTGGTGGTTGAGCCCAGAAATCTTTCTGAAAAGGCCAGTTATGGATGGGAATACCTGGAGACTGGATTGTGTCCTCAAACGGAAAGCTGAACAAGGAGTACGAATATGTATCCTCTTGTACAAGGAAGTTGAAGTAATTCTCGGCCTTAACAGTGAATACACCAAGAAAACCCTCATGGGACTGCACCCAAACATCAGGGTCATACGGCATCCCGATCACGTCCCCTCCACTGTGCTGCTCTGGGCGCACCATGAAAAGACAGTGGTGATTGACCAGTCTGTGGCATTTCTCGGTGGCATTGACCTGGCCTATGGCAGATGGGATGACCACCACCATCGACTAACTGACGTGGGAAGTGTAAGAAGGACTCCTCAGCCAAGTCCTGTGCTTTCTCCGAAACTAACCCAGGTTACCTGGGGAAAGAATAATTACCCTACATCCTGCACACCTCCAATGAATAAGAACACTGCAGCACCAGAAGCAGCCTGA

Function

NR:

description
PREDICTED: phospholipase D1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014669 True 1578 mRNA 0.48 14 26373224 26389223

Neighbor

gene id symbol gene type direction distance location
AMCG00014668 pcca,LOC107654247 coding upstream 37863 26318031 ~ 26335361 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding upstream 128766 26203883 ~ 26244458 (+)
AMCG00014664 zic2,LOC106586042 coding upstream 200750 26168461 ~ 26172474 (+)
AMCG00014665 NA coding upstream 249456 26085859 ~ 26123768 (+)
AMCG00014660 tm9sf2,LOC106574826,LOC107705039,LOC107719731,LOC107654273,LOC107556717 coding upstream 320681 26036433 ~ 26052543 (+)
AMCG00014670 NA coding downstream 9 26389232 ~ 26409091 (+)
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding downstream 196258 26585481 ~ 26588394 (+)
AMCG00014677 LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305 coding downstream 235538 26624761 ~ 26628707 (+)
AMCG00014681 NA coding downstream 470510 26859733 ~ 26866240 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding downstream 480003 26869226 ~ 26881796 (+)
G71859 NA non-coding upstream 141659 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 362224 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 413522 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 602735 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 624816 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 563073 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 637552 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 1085841 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1851343 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1908446 28297669 ~ 28300813 (+)
G71525 NA other upstream 3517578 22855342 ~ 22855646 (+)
G71004 NA other upstream 8098864 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 8886174 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 9904015 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10234192 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 515654 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1446280 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1479480 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1913150 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2407826 28797049 ~ 28837910 (+)

Expression


Co-expression Network