AMCG00014671 (tmtc4,LOC107600375)


Basic Information

Item Value
gene id AMCG00014671
gene name tmtc4,LOC107600375
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26346500 ~ 26360991 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014671
TCTCggtatttgtgtttttagcaCTGGTGTCGTTGCATactgcacacatgcacattagTGAGACTTATGTATTTGGCTCCTCGCTTTTGCAgatgtctgtgtgttgctgACTGAGAGTATTGCGTGGTCAGCGGCTTTCGGAGTAACCTGACGGAGTCTCCAGTAGTAGCAAGAAATCATGCATTGTAATGTAATCCGAATCAAAATGCCGAGGCTATAAGTGACCATGCTGTGGCCCAAGGACATTGAGAAACACCTGCCACGATGGTACTGTCTGAACTGCACTGGGACCACCATATAGTCCTGCCCAGGCTCACCCCCTCCCAGGCCAGGGTTCTGGTTGGTCTGGTAGCTTTCATCTGTTTTGCAAATAGCCACGATGGCGACTTTGTCTTTGATGATTCAGAAGCTATTGTCAATAACAAGgttgcGGGCATCGTTGGCAGGGCTGACCTCTTATGTGCGCTGTTCTTTCAGTTGTCCTTCCTCAGCTATTGCAAAGCCTTTCATGGAGATAGTAAAGATGACAAGTTCTCAGTTTCATGGACTATTATCAGCCTTCTGCTGTGTGCAGTGGCCATGCTCTGCAAAGAGCAAGGCATCACGGTTTTGggaGTCAATGCTGCTTTCGACGTTCTTGTGATCTGCAGTGTAAATTTCAATGAACTGTGCCAGCGGCTgctaaacaaagcaaaaccgTTAGAGATTAATGAATTTTTCAGAAAAGGATTCCTGACAAGAATGGGTCTCCTCACCCTTGGGGGAACCATCCTTTTGTACACACGGTGGAGGATCATGGGAACTGGCCCCCCAGCATTCACTGAAGTGGATAACCCGGCCTCCtttgcagaaaatatatttgtacgGACTGTGAACTATAATTACTACTACTCTTTGAATGCATGGTTGCTGCTGTGTCCCTGGTGGCTGTGTTTTGATTGGTCAATGGGCTGTGTACCACTTATTAAATCAGTCAGTGACTGGAGAATAATCTCACTACTGCTTCTCTGGATCTGCTTGATTGGGTTGATAAGCCAAGCTTTATGCTCCGAGGACAGCAGTAAAAGAAGCAATCTGTTCTTCCGAGTGGGATTCGTGATCGCAGAAAGAGTCCTCTATCTGTCCTCGGCTGGGTACTGTCTGATTGTGACGTACGCAATTGGCTGTTTATGTTGCCGTTGGAAGAACTACAAGAAACTCTTCCGTGTGGCACTGCTGGCCCTCCTGTGTGTGAATGCAGTGCGCTGTGCGGTCCGGAGCAGGCAGTGGAGGTCTGAGGAGAGCCTTTTCACCAgcgccctgtctgtctgcccccTCAATGCGAAAgttCATTACAATGTTGGCAAAAACCTTGCCGACAGGGGCAATCAGGCAGCTGCAATCAAATACTACAGGGAAGCAGTAAGGTTGAACCCGAAGTACGTCCATGCAATGAATAACCTGGGAAACATCCTGAAGGAATGGAATGAGTTGCAGGAAGCTGAAGAATTGCTCTCTAGCGCTGTCCAAATCCAGCCTGATTTTGCTGCTGCATGGATGAATCTGGGCATTGTACAAAACAGCTTAAAGAAGTTTGAGGATGCAGAGAAAAGTTATTGGAATGCAATTAAGTTCAGGAAGAAATATCCAGATTGCTACTACAACCTTGGAcgtttgTACGCAGACCTGAATCGCCATGTAGATGCCCTGAATGCGTGGAGGAATGCCACCATGCTGAAATCAGACCACAGTTTGGCGTGGAACAATATGGTCATTCTACTAGATAACACAGGAAACCTGGCACAAGCAGAATTAATTGGCAAAGAAGCCTTAAAATTACTTCCTAATGATCACACCATCATGTTTTCATTGGCTAATGTTCTGGGGAAACTACAGAAATACAAGGAGTCAGAGGGTCTGTTTCTTAATGCACTGAAAATCAACTCCAATGCTGCCAGTTACCACGGTAATCTAGCTGTCCTCTACCATCGCTGGGGAAAACTTGACTTGGCCAAGAAACACTATGAGCTCTCTTTAAATCTTGACCCCAGTGCCCCAGGGACCAAGGAGAACTACAACATGCTAAGGCGGAAGCTGGAGCAGCTACAGAAAAAGGGATCTGCTTGATGATGACCCGCGCACACCATTAATGCATGCTGCAGATATTTGATCTGAATCTTTATACTGTCCACTGAGTTTACATTCTGGAAgcaaaaagaggaaaaagaaatacacttgAAACCGCtgacttttaaatgtatcaccATTGTCTATAAATAATTGAAGATCTTTAGAGTGGCAATAAAATTCAGTTTCTGTTTTGA

Function

symbol description
tmtc4 Predicted to enable dolichyl-phosphate-mannose-protein mannosyltransferase activity. Predicted to be located in endoplasmic reticulum and membrane. Predicted to be integral component of membrane. Is expressed in central nervous system; neural plate; and retinal ganglion cell layer. Orthologous to human TMTC4 (transmembrane O-mannosyltransferase targeting cadherins 4).

NR:

description
Tmtc4 protein, partial

GO: NA

KEGG:

id description
K23424 TMTC; protein O-mannosyl-transferase

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014671 True 2303 mRNA 0.46 16 26346500 26360991

Neighbor

gene id symbol gene type direction distance location
AMCG00014675 NA coding downstream 9521 26336175 ~ 26336979 (-)
AMCG00014666 zic5,LOC102789084 coding downstream 186212 26154064 ~ 26160288 (-)
AMCG00014662 NA coding downstream 310673 25901904 ~ 26035827 (-)
AMCG00014663 NA coding downstream 444806 25901449 ~ 25901694 (-)
AMCG00014658 dock9,LOC106586262 coding downstream 494529 25774969 ~ 25851971 (-)
AMCG00014673 nalcn coding upstream 43091 26404082 ~ 26428529 (-)
AMCG00014674 LOC102787851 coding upstream 67690 26428681 ~ 26480278 (-)
AMCG00014672 NA coding upstream 161105 26522096 ~ 26539562 (-)
AMCG00014678 fgf14 coding upstream 282249 26643240 ~ 26645932 (-)
AMCG00014679 fgf14 coding upstream 320189 26681180 ~ 26698625 (-)
G71882 NA non-coding downstream 11500 26334655 ~ 26335000 (-)
G71880 NA non-coding downstream 22246 26324038 ~ 26324254 (-)
G71879 NA non-coding downstream 64535 26281374 ~ 26281965 (-)
G71876 NA non-coding downstream 78093 26267867 ~ 26268407 (-)
G71875 NA non-coding downstream 80284 26265731 ~ 26266216 (-)
G71961 NA non-coding upstream 571277 26932268 ~ 26932637 (-)
G72049 NA non-coding upstream 1057825 27418816 ~ 27419045 (-)
G72089 NA non-coding upstream 1169305 27530296 ~ 27530643 (-)
G72139 NA non-coding upstream 1475348 27836339 ~ 27837927 (-)
G72146 NA non-coding upstream 1495748 27856739 ~ 27861375 (-)
AMCG00014630 LOC107672672 other downstream 4101585 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 7121270 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 7142933 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 8324405 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 8725349 17589267 ~ 17621151 (-)
AMCG00014693 NA other upstream 924429 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 974704 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 1968748 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 3028299 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 4480532 30841523 ~ 30846800 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_01550846_01564109 TMTC4 coding CI01000009 null 1550784 ~ 1565168 (-)