AMCG00014673 (nalcn)


Basic Information

Item Value
gene id AMCG00014673
gene name nalcn
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26404082 ~ 26428529 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014673
ATGAATAGctcAAAGACAGATCCAATTACAGGGGCAGTGAAGAACACCAAGTACCATCAGCTCTATGATCTCTTTGGCTTGGTCACGTACCTGGACTGGGTGATGATAGTGGTGACTATCTGCTCCTGTATCTCCATGATGTTTGAGTCTCCCTTCACAAGAGTAATGCATGTCCCCACCTTACAGATCGCAGAATAcgtgtttgtcatttttatgaGCATTGAACTCAATCTCAAGATCATGGCTGATGGGCTGTTCTTCACACCGACGGCAGTCATCAGAGACTTCGGTGGAGTCATGGACATATTTATCTACTTAGTGAGTCTCATCTTCCTGTGTTGGTTGCCCGCAAATGTCCCCCCGGACTCCGGAGCCCAGCTGCTGATGATGTTACGCTGTCTGCGGCCGCTGCGGATCTTCAAGCTGGTGCCCCAGATGAGGAAGGTGGTGCGGGAACTCTTCAGCGGGTTCAAGGAGATCTTCCTGGTTTCTATCCTTCTGCTGACCTTAATGCTCGTCTTTGCAAGCTTTGGCGTTCAGCTGTTTGCTGGGAAACTTGCTAAGTGCAATGATCCGCACATCGAGAAGCGGaTCCATGGCATCTATatccatgtgtttgtgtttctcgGCTGTATGATTGGACTGACCCTTTTCGTTGGTGTGGTTATTGCtaatttcaatgaaaacaagGGAACAGCCTTACTCACTGTCGATCAGAGGAGATGGGAAGACCTGAAGAGCAGGCTGAAGATCGCTCAGCCCCTCCACCTCCCGCCACGCCCAGATAACGATGGCTTCCGCGCTAAGATGTACGATATCACTCAGCACCCGTTCTTCAAAAGGACCATTGCAGTGCTGGTGCTGGCCCAGTCCGTCCTGCTCTCGGTGAAGGTGACAATGAAATTGATTGCCATGTCGCCGGCTGGGTTTTGGCAGAGCAGAAGAAACCGTTACGACTTGCTCGTAACCTCCCTAGGAGTTATATGGGTCATCCTGCATTTTGCTTTACTGaatgAATATACCTACATGATGGGTGCTTGCATAATAGTATTCAGGTTCTTTTCCATCTGTGGGAAACATGTAACTCTTAAAATGCTGCTACTGACAGTGGTCGTCAGCATGTATAAGAGCTTCTTCATCATCGTGGGGATGTTCTTGTTGCTGCTGTGCTACGCCTTCGCAGGAGTTGTCCTGTTTGGCACAGTGAAATACGGGGAGAATATTAACAGACATGCAAATTTCTCCACTGCTGGCAAAGCCATCACAGTCCTCTTCCGAATTGTCACAGGTGAAGACTGGAATAAGATTATGCATGACTGCATGGTGCTGCCTCCTTTCTGTACACCGGATAAACACCGTTACTGGGAAACCGACTGTGGCAACTATGCCGGCGCCCTTATTTACTTCTGCTCCTTTTATGTCATCATCGCATACATCATGCTCAACTTGCTTGTGGCTATAATTGTGGAGAATTTCTCACTGTTTTACTCCACTGAAGAGGACCAGCTACTGAGCTATAATGACCTGCGTCATTTTCAGATCATCTGGAACATGGTTGATGACAAAAGAGAGGGTGTGATCCCCACCTCACGGGTAAAGTTTCTGCTGCGGCTTCTGAGAGGGAGGTTGGAGGTCGATCTGGATAAAGATAAACTCCTGTTCAAGCACATGTGCTACGAGATGGAGAGACTGCATAACGGGGGGGACGTCACCTTTCATGATGTCCTGAGCATGCTGTCCTACAGATCAGTGGACATTAGAAAGAGCCTTCAGCTGGAAGAGCTCCTGGCACGGGAACAGCTGGAGTACACTATCGAGGAAGAGGTCGCGAAGCAGACCATTCGCATGTGGCTGAAGAAGTGTCTAAAGCGCATCAGAGCGAAGCAGCAACAGTCATGCAGTATCATTACCAGCCTCAGAGAGAGCCAGCAACAGGAGTGGAGCCGATTCCTCAACCCTCCCAGCATTGAGACCACGCTGCCCAACGAAGACGTCAATGCCAACAACAAGGACAACCCTTCCCAGCCAGAGacAAGCAGTCAGCAACAGCTGCTGAGCCCCACACTCTCAGACAGAGGAGGCTATCGGCAAGATTCAACAGAAATGGGAAAACCACAGAGGAAATTCGGTCAGTGGCGCCTACCAGCAGGTCGGACTAGCATGAAGTCTATCGTTTGCAAGATGAACCCGGTGTGTGATGAGGCCTCCTCGGGCTCTGAGGTGAAGAAGTGGTGGACGAGACAGCTGACAGTGGAAAGTGACGAGAGTGGCGATGATCTCATTGACATTTAA

Function

symbol description
nalcn Predicted to enable cation channel activity. Predicted to act upstream of or within ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system. Orthologous to human NALCN (sodium leak channel, non-selective).

NR:

description
PREDICTED: sodium leak channel non-selective protein isoform X4

GO: NA

KEGG:

id description
K21863 NALCN; sodium leak channel non-selective protein

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014673 True 2292 mRNA 0.49 20 26404082 26428529

Neighbor

gene id symbol gene type direction distance location
AMCG00014671 tmtc4,LOC107600375 coding downstream 43091 26346500 ~ 26360991 (-)
AMCG00014675 NA coding downstream 67103 26336175 ~ 26336979 (-)
AMCG00014666 zic5,LOC102789084 coding downstream 243794 26154064 ~ 26160288 (-)
AMCG00014662 NA coding downstream 368255 25901904 ~ 26035827 (-)
AMCG00014663 NA coding downstream 502388 25901449 ~ 25901694 (-)
AMCG00014674 LOC102787851 coding upstream 152 26428681 ~ 26480278 (-)
AMCG00014672 NA coding upstream 93567 26522096 ~ 26539562 (-)
AMCG00014678 fgf14 coding upstream 214711 26643240 ~ 26645932 (-)
AMCG00014679 fgf14 coding upstream 252651 26681180 ~ 26698625 (-)
AMCG00014686 NA coding upstream 473692 26902221 ~ 26904187 (-)
G71882 NA non-coding downstream 69082 26334655 ~ 26335000 (-)
G71880 NA non-coding downstream 79828 26324038 ~ 26324254 (-)
G71879 NA non-coding downstream 122117 26281374 ~ 26281965 (-)
G71876 NA non-coding downstream 135675 26267867 ~ 26268407 (-)
G71875 NA non-coding downstream 137866 26265731 ~ 26266216 (-)
G71961 NA non-coding upstream 503739 26932268 ~ 26932637 (-)
G72049 NA non-coding upstream 990287 27418816 ~ 27419045 (-)
G72089 NA non-coding upstream 1101767 27530296 ~ 27530643 (-)
G72139 NA non-coding upstream 1407810 27836339 ~ 27837927 (-)
G72146 NA non-coding upstream 1428210 27856739 ~ 27861375 (-)
AMCG00014630 LOC107672672 other downstream 4159167 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 7178852 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 7200515 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 8381987 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 8782931 17589267 ~ 17621151 (-)
AMCG00014693 NA other upstream 856891 27285420 ~ 27304597 (-)
AMCG00014692 LOC107756725 other upstream 907166 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 1901210 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 2960761 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 4412994 30841523 ~ 30846800 (-)

Expression


Co-expression Network