AMCG00014677 (LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305)


Basic Information

Item Value
gene id AMCG00014677
gene name LOC107600373,LOC107569583,LOC107690616,LOC107748609,LOC107731761,LOC107681305
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 26624761 ~ 26628707 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014677
GCCATGGCTTCTGCTCCTGTGGTCGATGCATCTGCAGCGAAGGATGGTTTGGCAAGCTCTGCCAGTTTCCTCGGAAATGCGATATGACGGATAAAGAAAGCAAGAGCCTCTGCGAGACATCGGATGGCATCATCTGTACAGGAAAAGGTTCCTGTCACTGCGGGAAATGCATCTGCTCCCCCCAGGAATGGTACATTTCTGGGGAGTTCTGCGAATGCGATGACAGAGAATGTGACAAGCATGACGGTCTGATCTGCACA

Function

NR:

description
PREDICTED: integrin beta-like protein 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014677 True 260 mRNA 0.52 2 26624761 26628707

Neighbor

gene id symbol gene type direction distance location
AMCG00014676 itgbl1,LOC107748609,LOC107690616,LOC107681304 coding upstream 36367 26585481 ~ 26588394 (+)
AMCG00014670 NA coding upstream 215670 26389232 ~ 26409091 (+)
AMCG00014669 LOC107748618 coding upstream 235538 26373224 ~ 26389223 (+)
AMCG00014668 pcca,LOC107654247 coding upstream 289400 26318031 ~ 26335361 (+)
AMCG00014667 pcca,LOC107719738,LOC107707835 coding upstream 380303 26203883 ~ 26244458 (+)
AMCG00014681 NA coding downstream 231026 26859733 ~ 26866240 (+)
AMCG00014682 cdc16,LOC106581643,LOC107673708,LOC107597489 coding downstream 240519 26869226 ~ 26881796 (+)
AMCG00014680 NA coding downstream 257780 26886487 ~ 26890130 (+)
AMCG00014684 upf3a coding downstream 262025 26890732 ~ 26900814 (+)
AMCG00014685 NA coding downstream 297127 26925834 ~ 26961877 (+)
G71859 NA non-coding upstream 393196 26231219 ~ 26231565 (+)
G71826 NA non-coding upstream 613761 26010799 ~ 26011000 (+)
G71817 NA non-coding upstream 665059 25952233 ~ 25959702 (+)
G71784 NA non-coding upstream 854272 25770209 ~ 25770489 (+)
G71772 NA non-coding upstream 876353 25745803 ~ 25748408 (+)
G71963 NA non-coding downstream 323589 26952296 ~ 26953253 (+)
G71995 NA non-coding downstream 398068 27026775 ~ 27027272 (+)
G72072 NA non-coding downstream 846357 27475064 ~ 27479444 (+)
G72169 NA non-coding downstream 1611859 28240566 ~ 28297484 (+)
G72173 NA non-coding downstream 1668962 28297669 ~ 28300813 (+)
G71525 NA other upstream 3769115 22855342 ~ 22855646 (+)
G71004 NA other upstream 8350401 18271854 ~ 18274360 (+)
AMCG00014553 atp1a1,LOC108429865,LOC106919873,LOC103358968,LOC102798469 other upstream 9137711 17364798 ~ 17487050 (+)
AMCG00014525 NA other upstream 10155552 16465621 ~ 16469209 (+)
AMCG00014508 NA other upstream 10485729 16129479 ~ 16139032 (+)
AMCG00014687 NA other downstream 276170 26904877 ~ 26911237 (+)
AMCG00014704 fundc1,LOC102219358,LOC102292135,LOC102776203,LOC103475814,LOC106926458 other downstream 1206796 27835503 ~ 27841871 (+)
AMCG00014703 ndp,LOC107565935,LOC106586792 other downstream 1239996 27868703 ~ 27879800 (+)
G72175 LOC102776245 other downstream 1673666 28302373 ~ 28304073 (+)
AMCG00014729 NA other downstream 2168342 28797049 ~ 28837910 (+)

Expression


Co-expression Network