AMCG00014693


Basic Information

Item Value
gene id AMCG00014693
gene name NA
gene type misc
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 27285420 ~ 27304597 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00014693
CAATGTTTCACTCGATATACTTTGGGAAAATTAGTAAGGAAGAAACGGAGAAAATACTGGAATCGTATGGAAGAGACGGGAGTTTTCTCGCTAGAGACAGCGAAACGTTACCTGGAGTCTTTTGTCTGTGCGTGCGGAGAAACACTTTCGTCCACACCTATAGGATGTATCAATCTGCGGGGAAATGGGCTGTTAAGACGCTTCCCACAGTGACGCCCCAGTTTTTTGAGTCATTGGACAAACTCATTGGAACTTACAGAAAAGACCTTCCAGACAACATGGTTCCTTTGCTGTACCCCTTGGAAAAAGCAACACTCCTCAAGAACAGCAGAAGCAAT
>TU90016
CAGGAAGTTGAACAGTTTCAAATGTGCCAGATCAGAATCCACTCTGCTCAATACAACTCACTTCCCCCTAAATAACTCTTATTGCTCTCTGCTCCAGCAATGTTTCACTCGATATACTTTGGGAAAATTAGTAAGGAAGAAACGGAGAAAATACTGGAATCGTATGGAAGAGACGGGAGTTTTCTCGCTAGAGACAGCGAAACGTTACCTGGAGTCTTTTGTCTGTGCGTGCGGAGAAACACTTTCGTCCACACCTATAGGATGTATCAATCTGCGGGGAAATGGGCTGTTAAGACGCTTCCCACAGTGACGCCCCAGTTTTTTGAGTCATTGGACAAACTCATTGGAACTTACAGAAAAGACCTTCCAGACAACATGGTTCCTTTGCTGTACCCCTTGGAAAAAGCAACACTCCTCAAGAACAGCAGAAGCAATGagTGCCTGTATCTGGACATGAGCTAGGCTGATGGCTCTGTACAGGTGAACATCATCTCTTCAGCCAAGAGGCTTCGTTCTCTGAAGCGTGTGGTTTTACATGCTGAAGAATACAACAGGACTGCCTTACTTTTTTGCTTCTTATTTTGTCTACTGTTTTGAAGCACGGACCCTGTTTCTGAAAAGAAATTGCATTTAAGAAGACTAACACTTTTTTTGGTAGTGCGActtaatacatttctgtgtgaTACATATATTTCTTCCTGAAAACCATTACTAACACAAATATTGCATTCCTGTGGCAAAAATGGCCCTACTGGCATTTTATCCAGtttagcattttttattttattataaatttaaaatgaaacaagctctgtttgtgtttgcataTCTAACAGTGCCACTATTATATTCAcaggagagggggtgggggggggtcaaTGGTTGTTTTCCAGTTTTGTACTTTACTCGGCTAGTTAGCTATAGTAGATGGTTTCTTTGCAGAGATGCATTAAGTGTCGGTGAACATGACAGGGTCGAATAGAAACCTTACTGATATGCAATGAGATCAACctgattttaatgaaaacttaTTAAGTTTCTCAGAAAATGTGGGGGCGGTTGTCATCTCAAAGAGGTCTCTGTAATGTTTCCTTTGACACTGAGAAATCTGATGTCGAATTGAAAGCCACAGCAAGCCGAGTACTGGTTAGGAAAGGACTAACCTTGGGCTTTAAGACAATTAGCCTGTCTTTTAGCTAATTTCTTCTCTATACTTCAGCCAGTTTAGTTTGCATAGGCACACGTTTTTTATTTCGCTGTTGTTTGTGAATCATACTCTATTGTAAATAGATCATGCTATTGTATCTTCTTCTTTTGGGATCATGGTGAGGCACCATACAATCGTACATGAGTCTAAAATTGCGGGGAAGTAATAAACCAAAGTGATGTGATTTTCTCTTTGGAAATGGATGATTAGCTTTTTCATAATCCAAGGGTGAAGGTATAGCATTCCTTTCAATAAGATTTTCAGGTGATCCTGTAATTGTGACTGCCAGGGTTTTCCGCATTGATAGACTTTGACATCTGCACATCTGACTTGCTTTAGAAGTCATATCTTACTTATGAATCTCTGTAATGCTTTGAGTGGTATTCAATAAGATAGATTGTATGGGGTGAATGGTCATTTGTTTGCCGTGCTAAATAGTCTCCATCGCTTCCAAAAACTTGCGAATTTTACAGTTTTAGCTCTATCACATTATGGAAGTCATGACCAGTATCACTATGAACTGTAactgaaaggggaaaaaagctaATGTGCTGCCATTTGCAAACTATTTTAACACATTAGCCATTCCTCATACTTGATAGGCCGGTCTGCTTTCAAGATAACAGGAAAAATTGATTTCATGAATTAGCAAAATCAAATGGCTTAGAAATAGTTTCCAAGAAAACCAACTAAAAAGACTGAACTGCGAAATCTATTTCTCGGACGGTTTTATCAGCGGATTGACTTTAAGATTACAATCTTGGCGTCATGGGTTGGTATAACCAAAACAATATGTTCTATTTGATTGTTGTGAGGAAATATGCTGCAGTTGTTTTGGCCCAACAAAGCAATTCCCCCTCTTTAAATATCATGGGATGGGAAAAGACTCAAGTCGGGTTTGGTTAACTATGCCACTTgctttatagtttgttttttctacccTCAGTAAAGGAAACCCATTTATTATCTCACCCTGGGCTTCACCTTTGAACGAGCATCACGGAGTGCTTTCATTCTAGTCTCCTGAATTTCATCATCCATTTTACATTACAGCTCCAGCTTTCTTCACATAAGGTGTGCCTTCTTCTGCCAATCACTGGGGCACTCTCTTCagaaagtgttttaataattaaaataaatgcaggaaCAGATTAGAAAGGGGGTGGGTGTTCAGCTGATTGGGTTAGAATTGAGAAGCCTGGTGTCACGTTTCTCTtataaacacactgaaacactgaaagtaGACACCTGGGAACTGGGTTTCACCTCTGTATTtaagtattgttattttgtgtttaaccATGTCATACTTATATACTATTATGCTTTATTGCAGTTACTGCTAATGTTTAaagatgatttttttaaagaaacatattCTTGTTTTTGACAGTCTAATAACCTTGGAAGAACCCATTCTTTAAatttgacaaaaaaactaaaaatgttttgctacATCACAACAATACAAGTTTATTCagtgaaaagctttttttttggtatagtCAATTACTTGTGActttgcctttatttatttatttcaagaataAAGCACTTGACTTCATGCTTTGAAGCAAATACGTATACtcctataaataaatgtggtaATTTCTGCTCATGAATAAGTAGCAGGTTTCACCACAGACTGAAGCAAAGATATAATTCTAAGGCCCaagtatgtgtgtttttgccaACATTGTCTCTGAGACATGGTAAAGGTTTGGTCACATTTCTCTGCATCAGGATTTTTCTGATTACCAGTTAGGCAGTAAAGAGATAGAACATTGAAACCTCGAGCTGGCAGAGTTTAACCGTAGTAAAACACTTTTCAAGTCActttttgatgtgtttttcaaagCCCCTTCTGAGTCAACAGTGACTAATTTGTTGCAAAGCAATTAGTCACTGCAGACACCCTTTAGTTCTGATATGAAAATTCACTCACATCACATACAGTTGCCTGATCCGATTCTGTAAACATGCACACTTCTGTTTCAGCTCCCAGGTAAGGGTAAATGCTGTCTAAGTGAAATACAACGGCAGAGGATTTTCATCCCACTTCCTAAAgtgaaaaaattatatttacaaatgtgatagaaatatgaataaatatgtattgaaaaagAGAGTGAGATTGGCCAGAAATTATCAAGTGCACAAACTGCATTTTGCAGGGAAATCAGTGACTTACATTTTTAGCTAAACTAACGTTGAATGAACAATGCCAGGTTGTTGGGTGAACCAGTGTAGCCTTTTCATAGGCATTGTCTAATTATTCCCTCCTGACAAAAAGTACAGAAAACctgtaattcattttatatCCACATTTGAACATAAGGATGTTTTTATACTATAAAACATGTGCTCAGATAAGACTACATCAAATGCACACCTAATAGCTTTGTTTAAACACAATATCAGAGGTATAAATTACAGCAAGTGTAATTTGATAGTTGAGGCTTGGTGCAAAGGGCAGAAATTAGCATTCTTTCCCCTTATACcgcattttttgtgtgttttttttagcttATTAGGCTACATGGCCATTCTTAAATTGGTCATTTTTCCAGACCTGGATGGCTTCATTTTTTCTGAGCACACAAGTTGTGTAATCAAATCACATTCTGATTTTGCCTTATTGAATTTCTTAGGTATTGCATATTGTATTctgtataaatatgaaaatacataaatatatacatgtgcgGTGCATAATGCAGGAGGGGTGTAGGGGGCTAATGTGTCGACAGTGTCTCATTATGAGTCTACggcacaaacagcagagcttCAGTACTGTGAGGAGCACCCATGCAACTCTCACTGTTAGCATTGTGGGGTCACAGATGTCTAGTAAGGGACAGTGCATCTCTGGTCAACACAAGCCCCAGTTGCATGCCATTAGTCCAATTCTCCATTTTCTAGAAATGGAATTAAGAGAGGTTTTTTTTGACAGCATTGCGTTTGTACACTTATGCTCAGttcgtgtgtgtgagtgtgtgtttctgagtaATAAGAAATACGTAACTTCCGgaatgattttacattttctgacttccttttttttttaaggtaactTTAATAACCCAACGTTCCATTCTCTCATTCATTACTAAGCTCTTACACAAACTTTGGAAAAGCAGGCCCCAAGTCAGCAAAAACAGTTTCTTTACAAGATTGATCAGAGCCAGGTTGCTGGGAAATGTACATGATTAGCAAAttagtgtcacacacacactgctccaaAGCTCACTGGTTGGACACTCTGTATTTCACCTCGGATGTACATTTGCAAttcttttcctttcatttagcTTCAGAAGGTCTCTTATTTGTTCTAGAACAGCAGctcagaaataattaaacagaaattataaaaaCTATGGAAATGTTAAGGTTCAAAGACCTAAGTGTTTGAAAACGGCAAACATTTAGACTGCTGTGTCACAGATAATACTCCAGTCATGAGACTCGGCAGTTAATTGTGGAGTGCAGCAAAATATATGCTCTGTTTCAATGTATTACAGTCACACCaagattttcaaatgtttttgcaatttgAATCCTGCCCTCAACACACCAAATTAAGAACGCGTCATTCTTAAAATATTCACAGAGTGACCTCTTCATGAAACTTAATGTGGGCTAGGTGATTTTTTTTGAATTACAGCTATTCTATGAACTTTAAACTCCTGTGTATAtgcagctttttcatttttacttttatttttttattatcacaGACTATATAGGACACTGATTTGTGTTGGGTACAATGAGGAACTGATAGAAATCTGCTCAGGAAAACTAACCATTAACAAAAGCTGTACTATTTTTATGTCCATTTGCTACatgtatgctttaaaaataaataaataataataataataaaaaatataaaagggaTAACAATACACTAGAAACATTACATATTCATTGAGtaaattgactttttttgtgtTGCTACTGTTTTCCATTTGGAGTTCTGCATCAATTGAATGACTGGATTTTCTTTTAAGTGTCAGACATTTGTTATCATTTggataaatgaataataaaaaatcataccaacgtttatcttttaaaattttacatgtaaaatgtttgctAATTATCTGTCTTACCTCTGCTGTTTACAGACCAAGGAACAAGCTGTTATTTGTTGTAAcatatttcattgcattttacaTGTCTTACTAAACAAAtggattttctttcttcaaatattaaaaatgatttaaaagttttaatAGTTGcacatttagttttagtttttaatataaattgaaaatgtgtgtg

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05320 Autoimmune thyroid disease
ko05330 Allograft rejection
ko05332 Graft-versus-host disease
ko04940 Type I diabetes mellitus

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00014693 False 338 mRNA 0.45 3 27298451 27304500
TU90016 True 5503 lncRNA 0.36 4 27285420 27304597

Neighbor

gene id symbol gene type direction distance location
AMCG00014689 shox,LOC102229599 coding downstream 95902 27179103 ~ 27189518 (-)
AMCG00014688 NA coding downstream 251401 26980121 ~ 27034019 (-)
AMCG00014686 NA coding downstream 381233 26902221 ~ 26904187 (-)
AMCG00014679 fgf14 coding downstream 586795 26681180 ~ 26698625 (-)
AMCG00014678 fgf14 coding downstream 639488 26643240 ~ 26645932 (-)
AMCG00014700 NA coding upstream 68475 27373072 ~ 27377772 (-)
AMCG00014699 NA coding upstream 76589 27381186 ~ 27386627 (-)
AMCG00014698 NA coding upstream 92630 27397227 ~ 27404919 (-)
AMCG00014695 myh9,LOC103376082,LOC106601336,LOC100380669 coding upstream 115454 27420051 ~ 27421669 (-)
AMCG00014694 NA coding upstream 126654 27431251 ~ 27440929 (-)
G71961 NA non-coding downstream 352783 26932268 ~ 26932637 (-)
G71882 NA non-coding downstream 950420 26334655 ~ 26335000 (-)
G71880 NA non-coding downstream 961166 26324038 ~ 26324254 (-)
G71879 NA non-coding downstream 1003455 26281374 ~ 26281965 (-)
G71876 NA non-coding downstream 1017013 26267867 ~ 26268407 (-)
G72049 NA non-coding upstream 114219 27418816 ~ 27419045 (-)
G72089 NA non-coding upstream 225699 27530296 ~ 27530643 (-)
G72139 NA non-coding upstream 531742 27836339 ~ 27837927 (-)
G72146 NA non-coding upstream 552142 27856739 ~ 27861375 (-)
G72280 NA non-coding upstream 1273812 28578409 ~ 28578734 (-)
AMCG00014630 LOC107672672 other downstream 5040505 22225924 ~ 22244915 (-)
AMCG00014603 tpt1,LOC106582181 other downstream 8060190 19217722 ~ 19225230 (-)
AMCG00014604 kctd4,LOC107688678,LOC107748885 other downstream 8081853 19201803 ~ 19203567 (-)
AMCG00014567 mzt1,si:dkey-15d12.2 other downstream 9263325 17990651 ~ 18022095 (-)
AMCG00014559 NA other downstream 9664269 17589267 ~ 17621151 (-)
AMCG00014692 LOC107756725 other upstream 31098 27335695 ~ 27369527 (-)
G72236 rpl8,LOC107595836,LOC107748161 other upstream 1025142 28329739 ~ 28332482 (-)
G72477 LOC106598269,LOC101158751,LOC106586690,LOC103361283 other upstream 2084693 29389290 ~ 29398305 (-)
AMCG00014775 NA other upstream 3536926 30841523 ~ 30846800 (-)
G73047 NA other upstream 4958570 32263167 ~ 32263427 (-)

Expression


Co-expression Network